RnoINT0060186 @ rn6
Intron Retention
Gene
ENSRNOG00000019129 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:RGD Symbol;Acc:2313189]
Coordinates
chr1:85026899-85027783:+
Coord C1 exon
chr1:85026899-85027481
Coord A exon
chr1:85027482-85027583
Coord C2 exon
chr1:85027584-85027783
Length
102 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
CTGGTATTCTCTTCTTACAGCAA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTGAACGGCGTGGACATGAAGCTGCCAGTGGTGTTGGATGGAGGGAAGATCCGCGTCTCCCAGCACGGGTCTGATGCTGTGATCGAAACCGATTTTGGCCTGCGTGTGGCCTACGATCTCGTGTACTCTGTGCGGGTCACCATCCCAGGCAACTACTACCAGCAGATGTGTGGCCTGTGTGGGGACTACAACGGGGACCCCAAGGATGATTTCCAGAAGCCCGATGGCTCCCAGGCAACCAACCCCAGTGACTTTGGTAACTCCTGGGAGGAAGCCGTGCCCGACTCCCCCTGCGCACCAGTGCCTCCCTGCACAGGAGACGACTGTAACCCTGCGTGCAGCCCTGAGCTGGAGAACAAATATAGTGGGGAGAAGTTCTGTGGGCTGCTCACCAACCCCACAGGGCCCCTGGCTGCCTGCCACAAGCTGCTGGACCCCCAGGGTCCCTTGAAAGACTGCGTCTTTGATCTCTGCCTGGGTGGCGGGAACCAGAGTATTCTCTGCAACAACATCCATGCCTACGTGAGCGCCTGCCAGGAGGCTGGGGGGCAAGTGGAGCCATGGAGGACTGAGACCTTCTGTC
Seq A exon
GTGAGTTACGGGGCATTGAGAAGGGGTAGGGGTGGGTGGCATAGAGAAGGGGTAGAATCCCTGCCCCCACCCTGCTCTCTGACTGGTATTCTCTTCTTACAG
Seq C2 exon
CAATGAAGTGCCCGCCTCACAGCCACTACGAGGTCTGTGCAGACACTTGCTCCCTGGGCTGCTGGGCTCTCAGTACACCCCAGAAGTGCCCAGAAGTGTGTGCTGAGGGCTGTGAATGTGACTCTGGCTTCCTGTACAACGGCAAAGCCTGTGTGCCCATCCAGGAATGTGGCTGCTACCACAATGGGGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019129:ENSRNOT00000057122:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.7=39.0),PF087426=C8=WD(100=39.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTCCCTTGAAAGACTGC
R:
CACACTTCTGGGCACTTCTGG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]