HsaINT0063167 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40407936-40408848:-
Coord C1 exon
chr19:40408254-40408848
Coord A exon
chr19:40408136-40408253
Coord C2 exon
chr19:40407936-40408135
Length
118 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TCGGCACCCCCTCCTTGCAGCCA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GTGAACGGTGTGGACATGAAGCTGCCCGTGGTGCTGGCCAACGGCCAGATCCGTGCCTCCCAGCATGGTTCAGATGTTGTGATTGAGACCGACTTCGGCCTGCGTGTGGCCTACGACCTTGTGTACTATGTGCGGGTCACCGTCCCCGGAAACTACTACCAGCAGATGTGTGGCCTGTGTGGGAACTACAACGGCGACCCCAAGGATGACTTCCAGAAGCCCAATGGCTCACAGGCAGGCAACGCCAATGAGTTCGGCAACTCCTGGGAGGAGGTGGTGCCCGACTCTCCCTGCCTGCCGCCCACCCCTTGCCCGCCGGGGAGCGAGGACTGTATCCCCAGCCACAAGTGTCCTCCCGAGCTGGAGAAGAAGTATCAGAAGGAGGAGTTCTGTGGGCTCCTCTCCAGCCCCACAGGGCCACTGTCCTCCTGCCACAAGCTGGTGGATCCCCAGGGTCCCTTGAAAGATTGCATCTTTGATCTCTGCCTGGGTGGTGGGAACCTGAGCATTCTCTGCAGCAACATCCATGCCTACGTGAGTGCTTGCCAGGCGGCTGGAGGCCACGTGGAGCCCTGGAGGACTGAAACTTTCTGTC
Seq A exon
GTGAGTGAGGGAGAGCCGGAGGGGCAGGGAGGGGAGAGCTTGAGGCACAGAAGGGGTAGACCCTGGGCCTTGCAGCCCCTCCCTCCCCAGGGCTCTGATCGGCACCCCCTCCTTGCAG
Seq C2 exon
CCATGGAGTGCCCTCCGAACAGTCACTACGAGCTCTGTGCGGACACCTGCTCCCTGGGCTGCTCAGCTCTCAGTGCCCCTCCACAGTGCCAGGATGGGTGTGCTGAGGGCTGCCAGTGTGACTCCGGCTTCCTCTACAATGGCCAAGCCTGCGTGCCCATCCAGCAATGCGGCTGCTACCACAATGGTGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.7=38.2),PF087426=C8=WD(100=38.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(19.3=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGATCTCTGCCTGGGTGG
R:
TAGAGGAAGCCGGAGTCACAC
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)