BtaINT0061724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49747873-49748771:-
Coord C1 exon
chr18:49748177-49748771
Coord A exon
chr18:49748073-49748176
Coord C2 exon
chr18:49747873-49748072
Length
104 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
CCTGCACCCCCTCTTTGCAGCCA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTGAACGGCGTGGACAGGAGGCTGCCCGTGCTGCTGGACGAGGGCCGGATCCACGTCTTCCAACACGGCTCAGACGTCGTGATCGAGACTGACTTCGGCCTGCGTGTGGCCTACGACCTCGTGTACAACGTGCGGGTCACTGTCCCAGGCAACTACTACCAACAGCTGTGTGGCCTGTGTGGGAACTACAACGGCAACCCCAAGGACGACTTCCAGAAGCCGGATGGCTCACAGGCGGGCAGCGCCAATGAGTTTGGCAACTCCTGGGAGGAGGCGGTGCCCGACTCACCCTGCCTGCCGCCCCCCACCTGCCAGCCGGGTGACAAGGACTGTGACACGGAGCTGGAGTGTAAACCCGAGCTGCAGAACAAATACGAGCAGCAGGAGTTCTGCGGGCTCCTCACCAGCCCCACAGGGCCCCTGGCCGCCTGCCACAAGCTCCTGGACCCCCAGGGCCCCTTGCAAGACTGTGTCTTTGACCTCTGCGTGGGCGGTGGCAACGAAAGCATTCTCTGCAGCAACATCCACGCCTATGTGAGTGCCTGCCAGGCAGCTGGAGGCCACGTGGAACCCTGGAGGACCGAGTCTTTCTGTC
Seq A exon
GTGAGTGAGGGGCAGGGAGGGGGAGGCAGAGACACGGAAGGGCCAGACCCTGGGCCCCAGCACCTCTCACTCCCAGGGCCCTGACCTGCACCCCCTCTTTGCAG
Seq C2 exon
CCATGCAGTGCCCCCCCAACAGCCACTACGAGGTCTGCGCAGACACCTGCTCCCTGGGCTGCTCGGCACTCAGCGCCCCCCCACAGTGCCCAGAGAGGTGCGCCGAGGGTTGCCAGTGTGACTCCGGCTTCCTCAGTGACGGCCAAGGCTGCGTGCCCATCCAGGAGTGCGGCTGCTACCACAATGGCATCTACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.7=38.2),PF087426=C8=WD(100=38.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(19.3=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTGAGTGCCTGCCAGG
R:
AGATGCCATTGTGGTAGCAGC
Band lengths:
257-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development