HsaINT0063165 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40411638-40420164:-
Coord C1 exon
chr19:40419597-40420164
Coord A exon
chr19:40412231-40419596
Coord C2 exon
chr19:40411638-40412230
Length
7366 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GATGTCTCCTCTCCCTGCAGCAC
3' ss Score
11.48
Exon sequences
Seq C1 exon
GTGGATGACGTCCTTCAGTATCTGCCCTTCCAAGCAGCAGATGGGCAGGTGCAGGTGTTCCGACAGGGCAGGGATGCCGTCGTGCGCACGGACTTTGGCCTGACTGTCACTTATGACTGGAATGCACGAGTGACTGCCAAGGTGCCCAGCAGCTATGCTGAGGCCCTGTGTGGACTCTGTGGGAACTTCAACGGGGACCCAGCTGATGACCTGGCTCTGCGGGGTGGGGGTCAAGCTGCCAATGCACTGGCCTTTGGGAACAGCTGGCAAGAAGAGACGAGGCCCGGCTGTGGAGCAACTGAACCGGGTGACTGTCCCAAGCTGGACTCCCTGGTGGCCCAGCAGCTGCAGAGCAAGAATGAGTGTGGAATCCTTGCCGACCCCAAGGGGCCCTTCCGGGAGTGCCATAGCAAGCTGGACCCCCAGGGTGCCGTGCGCGACTGTGTCTATGACCGCTGCCTGCTGCCAGGCCAGTCTGGGCCACTGTGTGACGCACTGGCCACCTATGCTGCTGCATGCCAGGCTGCTGGAGCCACAGTGCACCCCTGGAGGAGTGAAGAACTTTGCC
Seq A exon
GTGAGTATCGGAAGTGGCAACTGGGGGACTCAGCCTTATATATATTCATTAATGTATAAATATCATTAATTCATTTAATCCTTATAATAGCCCTATGAGGTAGGGATTGTGGTTATACCCATTTAACAGATGAAGAAATTGAAGTTCAGAAAGGTTCAGTTACACACCTGGGATCATGATAGCTAGAAAATCACAGATGGTGGGCATGCAGTTGGTATTTTTTTTTTAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGAGTCTGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGCGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCCTGACCACGTGATCCGCCCACCTCAGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCGGCAGTTGGTATTTGTAAAATGACTGAGTACACCTGGTGGCCCAGGGTCTGATTCCCACATAACAGCTGTCATTGAGATATGAGCAACAGTATTGTCATTAGGAGTCTCATCCCCTCTCTGGTTCTTTTTGGTCCCCATCTATCCTACCTCGCTTATTTACATCTGCCTGACCCCTTGGGCAGTCAGTTTGAGAGCCTTGTTTCAGAGGTGGGTGCATGAATGGTTTTCCAACACCTTTGCTTGCCTATGAAAGAAGTTTGAAAAGCCATGCATCCTCTCACCTGATTTTTTTTAAGATGGGGTCTTGCTCTGTTGCCTAGGCTGGAGTGTAGTGGTGCAATCATAGCTTACTGCAGCCTGGAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAAACGGCAGGCTTGCACCACCATCCCCCGCTAATTTTTAAAATATTTTTTATAGAGACAGGGTTTTGATATTTTGCCCAGGCTGGTCTCGGGCTCTTGGGCTCAAGCAATCCTCCTGCCTCGGCCTCTCAAAATACTAGGATGACAGGTGTGAGCCATCGTACCAGTTTCCTCTCACCCGATTTTTAATTTAAAAAATTTATTATTGAAATATAATACAGATATTTAAAAATATGTACATATCATAAGCTAACAGCTTGATCAGTTTTCACCAAGAGAACAAACCTGTGTGAACTGTCCCAAATTCAAGAAAAAAAAAAAATCCAGGTTCCCAACCCCAAGAGGTAACCACTATTCTGACTTCTAAAGTTTTTGAATTTTGGAATTAATAGAAGCATACATGTCTAGTTTTTCACCTGAAATAATCATAAAACTTATAATTTCTAACAAATGGTAACTTTTGACTTTTAAGAACCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGACGCCCGCCACCATGCTTGGCTAATTTTTTTGGTATTTTTAGTAGAGAGGGGGTTTCACCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAAGTGATCCGCCCAACTCGGTCTCCCAAAGTGCTAGAATTACAGGCGTGAGCCACTGCTCATGGCCTTAAGAACATTTTTATTAGGGAAAAATTTAAACATATCCAAAGTAAACTAGGATAGTGAGCCAGCATATATCCATCATTTAGTTTCCACAATTATCAACATAATATTGGTATTTCAAAATGAAACCATTACTTGACTTATGCTCCTCTTTTAAATGTATTCAACAGATACATAGCACACAGTGGTACACATCATTGTCCACTGAAAAATACAGGATAAATACATCATTCCTTTTTCTCCTTCAACTTACATTCATTCATTCAACAAATATCCAAAACATTCAAAAATACCTTCTGTATTCCAGGCACTATTCTAAACACTCCGGATACAATAGGGGAGAGAATAAGAAAACAAATCCTTGCCTTTCTGAACTGATTTTCTAATGCTTTTTAGTTCTAACAGAATTTAACCTAATGTAACACATTTGAATGCATGGAAGTCTTTTGTTAAAGTCACTGTATCAGCTGGCTTTTGGTGCCTAACAAACAACCCAAGGCTTAGTGGCTGAGTGCATTAAAACAAGTGTTTATTTTTATTTATTTATTTATTTATTTATTTATTTATTGACATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCATTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTTCTGTCTCAGCTTCCCAAGTAGCTGGAATTACAGGCATGTGCCACCATGCCCGGCTAATTCTTTGTATTTTTAGAAGAGATGGGGGTTTCACCATGTTAGCCAGGCTGGTCTCGATCTCCTGACTTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCGGCCAAGTATTTATTCTTTCTCATGATTCTGGGGGCTGCTGAGCTGTTCTCCCAGCCTGGGCCAGCTTGGTTGATCTCTGCAGTCTGTTGGAGGCTCAGCCAAGGCCGGGTAATCTAGGGTGATTTTACACATCTGGCAGTTGTCAAGCTGGTTGGTTTGGGGGGCCCTCAGCTGGGAATTCTTGTCTCTGCTCTACTTGGTCTCATCTTCCAGCAGGTGAGCCAAGGCTTCTTCCCAAGGTGCTCTCAAGATTCCTAAGAGCACACAAGCCCCAGTGTGCAAGCACTTTCCAAGGCTCTACTTGGTATCATGGTGGCCAATGTCCCATTGGCCAAAGCAAGTGCCATGGTCATGCCCAGAGTCAAGACGTGACCATTGGCAGCCTGTGTCACAATCGCCATCACACTTCTCTGCCACAAACATACACATCTATGACTAAGATTTCAGAATTTTTATAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGCGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGATTCTGTCTCAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAATAACAGTGCAGTCTCCACTCATCCCAAATCTCAACACGTGGCATGTTGCCCTGGGGTGTGAAACCTCCCAGGACAAAACAGCCTTCTTATAAAAGATATAAGAAGTTTTAGAAATTCCTGAGACTCTAAGACTCTAAGTGGTTTTTTTAATGGAGTAAGATATCATTGCAAGAATTGTTTGTGCACAATTGATAAAAATATTAAACAGAAGTAAATTGTAATGGCCATTGTAATGGCATCACTCAGTGAGCTTACCCCCACCCAATATTTCACATATATTGTTAGAATGAGACAGGGTTCAGCATCAATTCTAATCCTATCTTTCATTTTTGTAGATATGATATTTATTTATTTTTGAGATAAGGTATTATCCTGTCACCGAGGCTGGAGTCCAGTGGTGTGATCACAGCTTACTGTAGCCTCCATCTTTGGGCTCGAGTAGTCCTCCTGTGTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACTACCATGCCTGGCTAATTTTTTATTTTTTGTAGACACAAGATCTCGCTATGTTGTCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCCTTCCTCCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGACTTGAGCCACAGCTCCTGGCTTACATGATATTAATAAGTGGGTGGGAGTGGACAGAGTGCAGGTGGAGTAACATCACTCCGTGCTCTGAACCCCTTCTGAGTCATAGGGAAGGCACACAGTGAGACACGACAAATTTATTTTATATTATCTGTGAGCAGCCAATTCTATTAGGCCCTCCTTTTGATTTATTACTCAATAATGATTCAGCATTCGTTGTGTTCACAGCGATAGCAATATTTGAAATCGTCCGTTTATGTCCTCAGAGGTTTCACACTCCAGGGCACTGTGCCATGTGTTAAGATTCAGGATGGGGCTGGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACTTGAGGTGAGGAGTTCGAGACCAGCCTGGCCAATATGGCAAAACCCTGTCTCTACAAAAAATACAAAAGTTAGCTAGGCCTGGTGGTGAGCGCCTGTAATCCCAGCTACTTGGGAGGTTGAGGCAGGAGAATCTTAGCTTAAACCTGGGAGGCAGAGATTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCCCACAGATCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAGATTCAGGATGGGTGGGGGACTGCACTGTTCTCTTCTGTAAAGTGCAGGAAGCACACTTGTGAAGGGGACAGGTGGACAATGGGAAGTGGGAATGCTCTTCTAACAGAGCATTCTTGGGCTGTCCTTTTAGGCAGGACACGTATAATTCCAGCTAGCAGTTGTGTGACACGCATCCCACTGGGCAGGTCCTGTTCTAAGGGTTTCTCATTGAATCCTCACAACCACCCCGTGAGGCAGAATTGCTCTTATTCCTATTTTACAAGACGAGGAAACTGAACCACAGAGATGTTAAGGAACTAGCCTGAGGTCACACAGCCGGTGGGGTGATTTGAACAGGCTGGCTCCTGATTTTGTGCTGTTAATTATCAGACTCTGTGGCCTGTGTGGAAATTGAGAATCTCTTGTTTCCTTAAAACTACTCCTTTCCTTGTACCACCTGGAAGTTCTAGAAGACTGGATCATGAGGTCTTAGATATGCAGACGGAGGCCTGACCCAGCTTGAACAATTATTGGTATTTTGCCATTCTTAGTTCCTCTACCTCTCACTCCACCCCCTCTTTTTTGGTAGAATATTTTAGATCAAATTCTAGGCAGATCAGTTCTCCTCTAACTACTTCAGTAAGCATCTGCTTTTCAGCAACAAAAAAGGACTTTTAAGGCACAGGAGTTTGCTTTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGTGGAAGGATCGCTGGAGGCCAGGAGTTCAAGACCAGCCTGAGCAACATAGCAAAACCCAGTCTCTACAAAAATAAAAATAAAGAATAAGCCGGGCATGGTGACTAGTGCCTATCATTTCAGCTACTCAGGAGGCTAAGGTGGGAGAATATCTTCAGCCCAGGAGGTGGAGGTGGCAGTGAGGCGAGACTGTGCCACTGCACTCCAGTGAGGCCCTGTCTCTAAAAAAAAAAAAAAAAAAAGGAAGGAAGAAAGAAAGAGATATGAGGGCATGTGGTAATTACCAGTAACAACAATAACATTAATTCCCTAACATCATGTAAAGCCCAATCTGGGTTCAAATTTTCCCAATTGTCTAAAAAAAAAAAAAGGTTTTTTTCTATTTTGTTTGGCTCTAGAACCAAACCAAATACACATACTGCATTGGATTGATCTACCTCTTTGCTTTTACTCTGTCAGAATTTCCTTCCTTTGTTCCTCCCAACATAGTATTATGAAAATTGTCAAATATACAAAAAAGTTGAAAGAATTTTACAGTGAAGACCCATAAACCTACCACCTGGACTCTACACTCTAATTCTTTTTCTTTTCTTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCTAATCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCCACCTCAGCCTCCCACGTAGCTGGGATTACAGATGTGCGCCATCATGCCCAGCTAATTTTTGTATTTTTAGTAGAAACGGGTTTTACCATGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCTCCTGCCTCGGCTTCCAAAAATGCTGGGGTTACAGGTGTGAGCCACCGCGCCCGGCCTCTTCACTCTAATTCTAATTCATTCATTTGCCTTATCACATAGCTATCCCTCCATCCAGCTCTTCCTTTTGTCTATGTCACTTATTTACTGGGAAAGATAGGTTATTTATCCTGCAGAATTTCATACTTTCAGGATCTGGCTAGTTGCTATTTTGGAGTGTTATTGAACTTGTCCCTATGTCCCCATGATTCTCCTGTAAGCTGGATGTCAGCTTCAGAACAGCACCACCCAGCAGAACTTCAATGATGACAGCTCCATATTTGAGCTGTTCAAATACATACCAGGTCACCACAGGTCACATGTGGCTGCTGAGCACTTGCAATGAGGCTGTTGTGACTGAGGAGCTAAATCTTCAATTTTGTTTCATTTTAATTAACTTACATCCAAATGGTCACAAGTGGCTAGTGGCTACTGTATTTGACAGCACAGATAGAGATTTAATGTGGTTTAGTTTTAGTCACTTAGATTTGCTTTTTATGGAGTGACTGGAGTTTGGGGAGGGGAGCAGGGAGGTTTTTCTTTTTTTCTTTATAACACTGGCTAAATATTTTAATTACTGCTATAGAAGGAAGAAGCTAAAAGTATTGCATTCACAAATATTGCATAGATTATACAAACACAGAAATATATGCATATGCATGTTTAAAATATATGCCACATATCAACACCATGTATCCAACTTGAATAAGGTCATTAAAGACATAATAGAAGGCTGGGTGTGGTGGCTCATTCCTGCAATCCCGGCACTTCGGGAGGCTGAGGCAGGTGGACTGCTTGAGCCCAGGAGTTTGAGGCCAGCCTGGGCAACATAGCGAGACCGCATCTCTATAAAAAATTTGAACAGTTAGCCAGGCATGATGGTGCACGCCTATAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTGCTTGAGCCCAGGAGGTCAAAGCTGCAGTGAGCTGTGATAGCAAGCACCACCGCGCTCCAGCCTGAGTAACAGAGCGACCCCTATCTCAAAAAAAAAAAAAACCATAATAGATAACTCCAAACCATAGTTAAATTGGGAAAGAATCTTAATTATCAGGATCAGATTAACTGCGATGTAATGTGTTCCCCAAGCACCCTGCAATGGGACCGCTTGTGTGTGAGTGTCTTTGAGCATCTGTGTGTGCATACGAATGTGTTGGGGGACCGCTTGTGTGTGTGTGAGTGTGTTTGAGCGTGTGTGTGCATATGAATGTCTTGGGGGACCACTTGTGTGTGAGTGTGTTTGAGTGTTTGTGTGCATACGAATGTGTTGAGGGACCACTTGTATGTGAGTGTGTCTCGAACTCCTGACCTGGGAGCAGGAATTCTTGATCTTGATGTCTCCTCTCCCTGCAG
Seq C2 exon
CACTGAGCTGCCCACCCCACAGCCACTATGAGGCGTGTTCCTACGGCTGCCCGCTGTCCTGTGGAGACCTCCCAGTGCCCGGGGGCTGTGGCTCAGAATGCCATGAGGGCTGCGTGTGCGATGAGGGCTTTGCGCTCAGTGGTGAGTCCTGCCTGCCCCTGGCCTCCTGTGGCTGCGTACACCAGGGCACCTACCACCCACCAGGCCAGACCTTCTACCCTGGCCCCGGATGTGATTCCCTTTGCCACTGCCAGGAGGGCGGCCTGGTGTCCTGTGAGTCCTCCAGCTGCGGACCGCACGAGGCCTGCCAGCCATCCGGTGGCAGCTTGGGCTGTGTGGCCGTGGGCTCTAGCACCTGCCAGGCGTCAGGAGACCCCCACTACACCACCTTCGATGGCCGCCGCTTCGACTTCATGGGCACCTGCGTGTATGTGCTGGCTCAGACCTGCGGCACCCGGCCTGGCCTGCATCGGTTTGCCGTCCTGCAGGAGAACGTGGCCTGGGGTAATGGGCGAGTCAGTGTGACCAGGGTGATCACGGTCCAGGTGGCAAACTTCACCCTGCGGCTGGAGCAGAGACAGTGGAAGGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=40.0),PF087426=C8=WD(100=40.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)