DreINT0010758 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36548820-36552810:-
Coord C1 exon
chr15:36552240-36552810
Coord A exon
chr15:36549086-36552239
Coord C2 exon
chr15:36548820-36549085
Length
3154 bp
Sequences
Splice sites
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
3' ss Seq
GCCCATTTGTCATTTTCCAGGTG
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTCAACGGTGTACTGTTGAATCTCCCATTTAATCTTCTTCAAGGTCAGGTTTCTGTCTTCAGAAGTGGCTTTTATGCTGTTGTTCAAACCTCTTTCGGCCTCAAAGTCACGTTTGACTGGAACAGCTTTGCAACCGTCACCGTCCCAAGCACCTACATGGGTGCCGTTTGTGGCCTCTGCGGGAACTATAATGGAAACCCAGAGGATGATCTGGCTGTCAAAGGAACAACTTCACTCTCTTATGGAGCCATGGAGTTTGGTGCCAGTTGGCTTGTAGCTCAGATCCCAGGCTGTGCTCATGGCTGCACAGACAACTGTCAGACTTGCGATCCGTCCAAAATGAGTCTCTATGGGACGTCTGATTACTGTGGGCTGCTGCGGGACCCACAGGGGCCTTTCGGGGACTGTCATACCATCCTAAACCCTGGTGCATTTTTTGAGGACTGTGTTTATGATGTCTGCCTGTATGGAGGAAGGCGAGATATCCTATGCCAAGCCATAACGACGTATGCATCTTCCTGTCAGGCCATGGGAAAGACCATCAGTCCCTGGAGAAGTGCTGAATTCTGTG
Seq A exon
GTGGGTGATTTCTGGCATTTTGTACCGAGAACTTTTGGGGAAATAAACACCGAGGAATATTGTTTCCATTCACAAGATTAAGTAGAGATAGACATTCATGATGCTGTAGTACTGGTTTCGTTCACATCAGCAAAGGCTTTGGGAATGCTAAAGCAGAGCACAAAAAACAAAGATAGTGAGGATAAAAGGGTGTGTTAGGACATTCAATAAGGCTATTCGAGATCAAACTGGACAGGATAATCTAGCCCAAGGGGTTCCCATCCTTTTGATGCCATACCCCAAAGTCATCCTTTTCTTAATATATAAAGGAAGTTGTAGATTTGTTTATCGTTAGAGGCACAATATGTACAATTTCCCACTTGAATATACTTATTCATAACCATAACAAAGGCGTTGATACATATTGCCGTAAATGAACATGGAATCATGGGAGTTATTGTGCTTACATAAGTCGGATGAGAGTCTGGCTGAAAAAATGTTCAGGATGTGGTAATGATATAAATAATTTTACAGAAATTAAGCACAGTTTAAATAAATATGAATGACAGGCTGCGTCCGAAACTGCATACTTCCATACTATATAGTACAGCACAATCAGTATGCAAGCCGAGTTGTGTCCGAATTCATAGAATTCGAAAATCAGTATGCGAGAAGACCCCAGATGACTTACTACCTCCGACAAGATTCTGAAGTACGCATTCCATGCACGCTGAGCTATCCCATGATGCCCTGTGAGAGAATTCATGAATGGGAGTAAATCGACGCAAATGACGCATGTAGGTCACGTGACCATGAAAAAATGGCGGATGTAGTACATCCGAATTCCATTCATACTTTTCACATTCATACAATAGAAGGTACTTTTCTAACGGCTGAGTAGTACGTTTAAATTCAAATGCCAAACCTACTGAGTAGTAGGCAGTTTCTGACTTAGCCTAAGACACTGATTTAAGCAACACAGGCTCATTGTGGATATGTATCCCTGTCAACATTTCTGGAGAAAGTGAATTATGTAGCCAGAGGTACATCTGGCTGTAGCTACTGTATAGGTGAGCTATTATTTAAAACATGAATTTACCTCACGTCATAGAGCATACATTATTGGTTTTATTTCATACTAGACTATTTATTAAGAAATCTGTACAATATATGACATGGGCCTGTTGGTTAGAACATTTTTGCAGTGGTTTAAATGTGTCAACTTGTAAAAATAGACTTTTACAATAAATAAAATAATAAATAAACAAGATCCTTCTTAATTATAATAAAAATAAAGACAATAATGATAATTATTATTAGGTAGGTTTTTTTTTTCATTTCTTAATAAATAGCCTACTGTAAATTACAGCAATTACCAATTTATATGATTTATATATGAGATAACAATACGTATTAGCAAAGTGGTTTTATGTTTTAAAATAAAATATGGAATCTTCTCAATAATAGCCTATTTGTAAAGGAAACATTGGCCCTATATGTGCCGTTTACATGTATATATTTCAATTAATAAGGAAAATGAGTGCATGTTTTTACCAGAACAAATGTTGGATTTTTTAATTTTTTAAATGCGCATGTGTGTAAAACAATATAATGTGCACAAAAAATCATGGGGTTTTTCCTCCAAAGAAGTTTTTACTCCACCCCGTTTAAAGTAGCCCCTTTCACACATACAGATCCTTCTGTATGTGTGAACGGGCCCTTTTTGAAAATACCGGTAAATTCGTTTCGGCTATTTTCCGGAAAGAGGAATTGTAACATGCCAGATTGCTGCGCTGTGTGAACGTAGAAAGAAGATAACCGTAAAGAGCGCGTTCACGTCTAGAACATGCTGATGTTAGACGTCTACTTTAGCCAATCAGGGGTGTGTTTCCTAAACAATGACATAACTCGCGGCTGAACTATCATAGTACGATGCATCGTTAAGGAAAAGAACGATGTAGTGACGAGTGCTTCCCAAAACGCACAGTTTCTCTGTCGCAGATCCATCGCTTGAACCACGTTAGTTATAACATTAAACGCCCATAATGACGCTCTAAACTGGGTGGAGTAACTACTTCTTTAGAGAACAACCCATAACTTTAATGCTTTTTTATTTTTAATAATTCCAACTTTGAATGTTAGAATGTTCTAAATGAATAGGGCATTGGGGGGATAAGTGGCAATAAAACACAACCAGGAACTATGTTTGTAACTACAGCTCCAGAGCTGTAAGTGCCAGTGCTCAAGTTTGCGATGCAGTTTGTGAATGTTTGTTGGAGCGACAGACTTGGGAAATGGCAGATCAACAAACTATGTTTCTAACGACAGAACAGTCAGACGCATTCACGTCTGTGCGTGTGTGAAAATAAAAGCCTATGAATATTTTCCCAGACACATTTATCTGCTAGATGTTAGTCAGATAACGTTTACATGTTCCTTCTTAATGCCAACTGTGTAAATAATTATCGATAATCAATAATAATCGATAATAATATGCCTACTGTATGATAAGCTGTTGTTTGTTTACCTTCAAGCTCTGCTTCCTTCAGTTGTGTGATGCGTCGCATGTGCCTGTGAAGCACCCCGTAAGCACCAGCACACACACATATCATGTACATCTCGACATGCAAAAGTGTTCCTCTATATTTTCATCAAAGTTGTTAACAATATTCATCCATTCACAGAGTTTGTAATGTAATCAAATGTTTACAAATACAAGCCCAGCCATTTAGAGGTCATCTCTGGTTAATGATGTCAGAATTTTATTTCTAGAAAAATACCGTAACGTCCTCGCCTGTGTAAATAGCGTTTTTTTTTTATTTACCAGTAAAGTCGTTTCAGAAATCTTCCGGATATTTACCGGTATCACTGTGTGAAAGGGGCTAGTGTCATCATGGGTGTTTTACATTATAATTAACGTGGTTCAAACAACGGCTCTGTGACAGAAAAACTATGGGAAACGCACTCCTGGTTGGCTGAAGTGTATATTGCGCCCTCTGGTGGATTTATACAAGAAGCGCGAGAGAAATTTGAGATCATCAAAAAGCATACACAGCGGCCTCTGGTGGATTTGCAAAAATAAAAACTGGGGTGCCTTCAGGATAAGGTTTTTACTTCAGGATTATTAATGTTTTTGTTTTCTACCTTTTTAATCTGCCCATTTGTCATTTTCCAG
Seq C2 exon
GTGTTCAGTGTCCTCTTCACAGCCATTACGAGCTGTGTGGATCTGGCTGTGAAGTCACCTGTGAGAGTTTGGCTCCTCCGGTTGGTTGTCGTAGCCTCTGTACGGAGGGATGTGTGTGTGACCAGGGCTTCATCAGGAGCGGGGATCGATGTGTACCGCTGGCCCAGTGCGGTTGTGTTTATGGAAGCCGCTACTACTTGCTTTACCAAAAGTTCTATCCTGGCAATAGCTGTGAGGAGGTGTGCACGTGTTCACCAGATGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.1=39.3),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=60.7),PF127142=TILa=PU(55.4=34.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]