GgaINT1001146 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12688943-12691753:-
Coord C1 exon
chr9:12691476-12691753
Coord A exon
chr9:12689539-12691475
Coord C2 exon
chr9:12688943-12689538
Length
1937 bp
Sequences
Splice sites
5' ss Seq
GCCGTACGT
5' ss Score
8.04
3' ss Seq
TAATCTTTTACATTACACAGCAC
3' ss Score
3.47
Exon sequences
Seq C1 exon
GTGCTTGCCAGATGATGGCCATATCCCAAATTGCACTGCTGATGAAAAACATATGATCCAAAGCAATAAATACTGTGGTCTGATCACTGATCCCAGTGGTCCATTCCAGAATTGTCACTCAGTAGTTGATCCACAGAGCTATTTTGAAGACTGCCAGTATGATCTCTGTGAGCTTCATTTGAGCAGCGAAGCCCTCTGTCAAAACCTGCAGGCTTATGCAGACATGTGCCAAGCTGCAGGAGTCCAGCTGACACCATGGAGAAATGCAACCTTCTGCC
Seq A exon
GTACGTATCAAAGATTACTGGAAATTACCATTTGTCAGGAGGATATCATTAGGGTTGCCTGAAGAGAGAGCATTACAAGAAACTCTTTTAAATTCCTGTAACACTGTAAATCTTGACCTATGAGGCTAAAGATTTCAGAATCATGTGTAGTCCTTAGCTTGAATCCTTGAGTCCTTTAGAAAGACTGATGAAAGTAGAGAGCTTTTCTTTTGAATTCTTCTCCTACCCTATATTTTTGTTCAGGGGTACTAAGTATATCAGGGACATTTGACTTTGAGGGTTTTTTACCTTCTGAGGAAGCTGTGCATAAACTTTAGGGTCTTTGAGGGGAAAAAAAAAATCTCATTTTGCACATGCTTAGTAGAGGTGAGAGCCTCACCCACGCCCCCTGTAGAGAAGCTGAGATACCTTACTCTATTCTCTTAGCCTCTTCACCTTGTAGGGTGACCAGGCACCCAGTCAACAGAAAGGAGGTTGTGCCTTCTCTTGCAGCAACCCCAGCAGAAGCTCATTAAGACAGATATCTCATGTGAACACAGAAGGGATATGAGCCAGAGCAGATGAAGGGCAGAGCTGCTGTAGATAAGGAATCCAGGTGGTCTGGGGCAATGAGAAAGGAGCTTTGATTAAGAACTGGAGAGAAATGCTGAATGGGGTAAATGGGAGGCCCTGGATTTTGAGAAGGCAAGTAGCTTCTAGAAAGGAAAACGAGAACATGCTTACAGGGCTATGGAAAAGTGGAAGTACATGTTGAGACTGGCTAAACTAAGTAGAAGGAACATGGACTAGGTAGCCAGTCAGGGGGTCAGTTTGTTGCCCCTGCAGGAATGATAAAATCAAAACTGGTGGGAGGAATAGATCTGAGACTGAACAGTAAAGATGTCTGAAATTCAGAATTTATACCAATGTAAAGAGAGCAGGATGAGGCAGAAAAATGCTTGATGAACTGAGCAGAAGATCTGGGAATCAGTATATTCTGCTGTGGCCTGTGTGCCCTCTGCCTTGAGGGAGATGAGGAGACTCAAGAAAGATGCTGGTCTGCAAACACTGAAATGGCTGAAGCCAAATTTACTCTGGATATTTGTTTCACAATTAATTGTAATCTCTTGCTGGAGCATTTTATTTGCTAAGGATATTATTAAGGCTTACTCCCACATAAATTCCGTGATTTCTAAGCAGGAATAAACCCTCTCTGTAGCTGTTCTTTCTGCTGCAGGAGCTTGCGGGTCTCTCCTGCTTGCCTTACTCCTGTTTCAAACTATGCCTTTGTCCTCTGCCAACCTCACTTATTTCTGGGTCAGTTCTAATTAATGAGAGGATGGACAGGGAAATATACAATGTAATTATATGATCTCTATTGCTTAAGGAAGCAGACTAAAATAGAGTGGGGCATGTCATTAAAAACTGAACTACATCACATAAGTGTACAGAATCTGAAAAGAGACTGAAGATTGAGGTTAGAAGAACTTCGAATTAGCTTAGTTTTTCTTTTTAACTAGTGACATGTGTAGCAAGGTATAAAAACAGAATAGGGTGCATGTACATCACGATTATTTAACAAACATTAAAGAACTTCAGGGATTGAAAAAGTATGAATTCAGAAGCTATGATATGATTAGAATTATCAGACCTGTAGCCTGAATGGGGCACATGACAAGGACAAATAACATGACACAGATATCCTCAGCTGGAAAAAGTAGCAAACAATGACCAGAATAGAAGATCTCATAAGAAATTCTCAGACAGAGAAATTGTTAGGAGCCACAACCATGAACTATGTTAAAGGGCACTTACGCAGAAAAGGCAAGGATTGCATTGCCACAGGATTCCAGGGTGTCCTCAAGACTGCAGAACAAAACAGAATATGCCATTAAATAAACCCAAATACTTCAATATTTAAAATATAAACTTCTGTATTAATCTTTTACATTACACAG
Seq C2 exon
CACTAGCCTGCCCAGCCAACAGCCACTATGAGCCCTGTGCTGCAGCTTGCCCTGCTACATGCGTTAACCCAACCGCATCATACAACTGCAGCTTGCCGTGCGTGGAGGGATGTGTATGCGACAGCGGGTACCTGCTCTACAACAGTCAGTGTGTGCCCAGCCAGCAGTGTGGGTGCTGGCACAACGGGCAGCACTACCCGGTGGGCTCAGAGTTCTGGACGGACAACACCTGCTCGTCCAAGTGCACATGTCCCACGCGAGGAGGCAAAGTCCAGTGCTCCAGTGCATCGTGCCCTGCTGGCCAGTTCTGTGGTGTGCAGAATGGGAAACCCGAGTGCCTGGAACACTCCTACGGCATCTGTCACGTCCACGGGGACCCTCACTACAACACCTTTGACAAGGTGACGCACAACTTCATGGGGAACTGCACGTACACCCTGGCCAAAGTGTGCTCCAACACCTCCGTGCCGTACTTCAACGTTGAGGCAAAGAACGAGCATCGTGGCAACCCCCGAGTGTCCTACGTGCGTGAAGTCGTGGTCGATGTGTACGGAGAGCGCATTACCATACTCAAGCAGGAGAGGAGCCGAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=WD(100=27.1),PF127142=TILa=WD(100=28.6),PF0009420=VWD=PU(50.0=39.2),PF133491=DUF4097=PU(42.6=24.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTTCATTTGAGCAGCGA
R:
CAGGTGTTGTCCGTCCAGAAC
Band lengths:
342-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]