HsaINT0065100 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45241129-45241634:+
Coord C1 exon
chr17:45241129-45241230
Coord A exon
chr17:45241231-45241381
Coord C2 exon
chr17:45241382-45241634
Length
151 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCCTCCCGTGGGGTTCGTAGGAG
3' ss Score
6
Exon sequences
Seq C1 exon
CTGACAGAGCGGCTTCGGGACGCGGAGAACGAATCCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAGGCGCGCAAGGAGTTGGAGACCCTGCGG
Seq A exon
GTGAGGCTGGGGCGGGTGGTAGGCCAGGCGCCCAAGAACAGGCCAGCTGAGGCTTCTAGGCTTGACATCTCCCTCCACCCCGGGAAGAAGATGGAGGCTTGGTGCCAAGGAGCCTGCTGGTGGGCACTGACCCCTCCCGTGGGGTTCGTAG
Seq C2 exon
GAGCGCTTCAGCGAATCGACCGCCATGGGGCCCTCCAGGCGTCCCCCAGAGCCTGAGAAAGCGCCTCCCGCTGCCCCGACGCGGCCCTCGGCCCTGGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATTCTGCGGGGGCCGGGGGATGCTGTCTCCATCGAGATCCTCCCCGTCGCTGTGGCAACTCCGAGCGGCGGTGATGCTCCGACTCCGGGGGTGCCGACCGGCTCCCCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.953
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(21.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(4.6=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGATTGCAGAACTGGA
R:
CGGGGAGGATCTCGATGGAG
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development