HsaINT0065100 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43318496-43319001:+
Coord C1 exon
chr17:43318496-43318597
Coord A exon
chr17:43318598-43318748
Coord C2 exon
chr17:43318749-43319001
Length
151 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCCTCCCGTGGGGTTCGTAGGAG
3' ss Score
6
Exon sequences
Seq C1 exon
CTGACAGAGCGGCTTCGGGACGCGGAGAACGAATCCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAGGCGCGCAAGGAGTTGGAGACCCTGCGG
Seq A exon
GTGAGGCTGGGGCGGGTGGTAGGCCAGGCGCCCAAGAACAGGCCAGCTGAGGCTTCTAGGCTTGACATCTCCCTCCACCCCGGGAAGAAGATGGAGGCTTGGTGCCAAGGAGCCTGCTGGTGGGCACTGACCCCTCCCGTGGGGTTCGTAG
Seq C2 exon
GAGCGCTTCAGCGAATCGACCGCCATGGGGCCCTCCAGGCGTCCCCCAGAGCCTGAGAAAGCGCCTCCCGCTGCCCCGACGCGGCCCTCGGCCCTGGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATTCTGCGGGGGCCGGGGGATGCTGTCTCCATCGAGATCCTCCCCGTCGCTGTGGCAACTCCGAGCGGCGGTGATGCTCCGACTCCGGGGGTGCCGACCGGCTCCCCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.976
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(19.5=100),PF138701=DUF4201=FE(33.7=100),PF029949=Transposase_22=FE(44.0=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(4.1=8.2),PF138701=DUF4201=PD(7.1=8.2),PF029949=Transposase_22=PD(14.7=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGATTGCAGAACTGGA
R:
CGGGGAGGATCTCGATGGAG
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)