RnoINT0061611 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91275418-91275941:+
Coord C1 exon
chr10:91275418-91275519
Coord A exon
chr10:91275520-91275688
Coord C2 exon
chr10:91275689-91275941
Length
169 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTTTTTCCTGGGGCTCACAGGAG
3' ss Score
6.47
Exon sequences
Seq C1 exon
CTGACAGAGCGGCTTCGGGACACAGAGAACGACTCCATGGCCAAGATCGCTGAACTGGAGAAGCAGCTAAGCCAGGCTCGCAAGGAATTGGAGACCCTGAGG
Seq A exon
GTAAGCTTTGGTGTGGGCTGAGCCAGGATGGGGGTGTGCGCCAGGCCAGGCTTCCCAAGGAGTCTTCTCTGCTTTACATCCCAGTCCATCCCAGAAAAAGAATTGGGCGGGGTTGCCGTATACCGGAGAGCTTGCAAGTGGGCACTAATCTTTTTCCTGGGGCTCACAG
Seq C2 exon
GAGCGCTTCAGCGAGTCGACCCCCATGGTCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGCTCCTACCGTGGTGCGACCCTCAGCTCTTGAGCTGAAGGTGGAAGAGCTTGAAGAAAAGGGGTTAATCCGTATCCTGCGGGGACCGGGGGATGTCGTCTCCATCGAGATCCTCCCCGGCGCTGCGGCGACACCAAGCGGTGACGACGCACCAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.7=100),PF051307=FlgN=FE(38.8=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(19.2=44.7),PF051307=FlgN=PD(7.1=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGAACGACTCCATGGC
R:
TCTCGATGGAGACGACATCCC
Band lengths:
257-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]