HsaINT0065108 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45244819-45245108:+
Coord C1 exon
chr17:45244819-45244899
Coord A exon
chr17:45244900-45244978
Coord C2 exon
chr17:45244979-45245108
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TACAATGGGTCCTTGTGCAGCTG
3' ss Score
6.84
Exon sequences
Seq C1 exon
ATTGTCCTGGCCTTTGGCAACTACATGAACAGTAGCAAGCGTGGGGCAGCCTATGGCTTCCGGCTCCAGAGCCTGGATGCG
Seq A exon
GTGAGGAGGGGCCCCTGGCTTGGGGACTGGGGCTGGGGACTGGCTGGTGGCCTGTGGCTTACAATGGGTCCTTGTGCAG
Seq C2 exon
CTGTTGGAGATGAAGTCGACTGATCGCAAGCAGACGCTGCTGCACTACCTGGTGAAGGTCATTGCTGAGAAGTACCCGCAACTCACAGGCTTCCACAGCGACCTGCACTTCCTGGACAAGGCGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.8=100)
A:
NA
C2:
PF0218118=FH2=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACAGTAGCAAGCGTGGG
R:
CTTGTCCAGGAAGTGCAGGTC
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development