RnoINT0061618 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91278912-91279198:+
Coord C1 exon
chr10:91278912-91278992
Coord A exon
chr10:91278993-91279068
Coord C2 exon
chr10:91279069-91279198
Length
76 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TATAACAGATCCTTGTCCAGTTG
3' ss Score
2.79
Exon sequences
Seq C1 exon
ATCGTCCTGGCTTTTGGCAACTACATGAACAGTAGTAAGCGTGGGGCAGCCTATGGTTTCCGACTTCAGAGTCTGGATGCG
Seq A exon
GTGAGATGGGGCTCCTAGTCTGGGGCTGTCTGGGGTCTGGTTGGTGGCCTGTGGCTTATAACAGATCCTTGTCCAG
Seq C2 exon
TTGTTGGAGATGAAGTCGACTGACCGGAAACAGACGTTGCTGCATTACTTGGTGAAGGTCATTGCTGAGAAGTACCCACAGCTCACGGGCTTTCATAGCGACCTGCACTTCTTGGATAAAGCAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGTAGTAAGCGTGGGGC
R:
TCCAAGAAGTGCAGGTCGCTA
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]