GgaINT0143091 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1348591-1348982:+
Coord C1 exon
chr27:1348591-1348671
Coord A exon
chr27:1348672-1348931
Coord C2 exon
chr27:1348932-1348982
Length
260 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CTGACATTGCTCTCTCCCAGCTG
3' ss Score
7.99
Exon sequences
Seq C1 exon
ATCGTCCTGGCCTTTGGGAACTACATGAACAGCAGCAAGCGTGGGGCAGCCTACGGCTTCCGCCTGCAGAGCCTCGATGCG
Seq A exon
GTACGTTGGGTGCAGGTCTGGTGTGGGCAGGCAGTGTCACTGCATGGGGGCACACCGTGGGAGCAGAGGGATGCAGTGACCTGCTGTGGGTGGGGGGGATATTGGAGGCAGCCGTGGGGTTGGAGCATGTGTGGAGATGGAAGGGTGTGTGTGCACAGAGGGACATGGGAACCAGCTATGGGGAAGGAGGGAGGGCTGCCCCGAGCAGGGGGCAGTGGGGCAGTGGGATGCAGGGCAGGGCTGACATTGCTCTCTCCCAG
Seq C2 exon
CTGCTGGAGATGAAATCAACAGACCGTAAGCAGACACTGCTGCATTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.9=100)
A:
NA
C2:
PF0218118=FH2=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]