BtaINT0063197 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30368301-30368611:+
Coord C1 exon
chr5:30368301-30368381
Coord A exon
chr5:30368382-30368481
Coord C2 exon
chr5:30368482-30368611
Length
100 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCTTTGCCCCCCTCGACCAGCTG
3' ss Score
6.67
Exon sequences
Seq C1 exon
ATCATACTTGCGCTGGGGAACTATATGAACAGCAGCAAGCGGGGAGCTGTGTATGGCTTCAAGCTCCAGAGCCTGGATCTG
Seq A exon
GTAAGAGGGTAGGGGCGACACGGAGCCAGGGAGCTTGAGGGGCAGCTGTGGAGCCCAGGTGTTCAGACCTGTTGCGTTGCCCTTTGCCCCCCTCGACCAG
Seq C2 exon
CTGCTGGACACCAAGTCCACCGACAGGAAGATGACCCTGCTTCATTTCATCGCCCTGACGGTGAAGGAGAAGTACCCAGACCTGGCTAACTTTTGGCACGAGCTGCACTTTGTGGAGAAAGCCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATACTTGCGCTGGGGAAC
R:
CTGCAGCGGCTTTCTCCAC
Band lengths:
211-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]