HsaINT0065159 @ hg38
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr12:49649029-49649339:-
Coord C1 exon
chr12:49649259-49649339
Coord A exon
chr12:49649159-49649258
Coord C2 exon
chr12:49649029-49649158
Length
100 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GCCCTCACCCCCTCTCCTAGCTG
3' ss Score
6.38
Exon sequences
Seq C1 exon
ATCATACTTGCACTGGGGAACTACATGAACAGCAGCAAGCGGGGAGCTGTGTATGGCTTCAAGCTCCAGAGCCTGGATCTG
Seq A exon
GTAAGATGGTGAGGGCAGCGTGGGCCAGGAAGCCTGGGGGGCAGCAGTTGTGGAGCCAGAGTGCTTAGCTCTTGTGCACCGCCCTCACCCCCTCTCCTAG
Seq C2 exon
CTGCTGGATACCAAGTCCACTGACCGGAAGATGACACTGCTTCATTTCATCGCCTTGACAGTGAAGGAGAAATACCCAGACCTGGCTAACTTCTGGCATGAGCTGCACTTTGTTGAGAAGGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791:ENST00000352151:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACTTGCACTGGGGAACT
R:
CTGCTGCAGCCTTCTCAACAA
Band lengths:
210-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development