RnoINT0061667 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140985460-140985759:-
Coord C1 exon
chr7:140985679-140985759
Coord A exon
chr7:140985590-140985678
Coord C2 exon
chr7:140985460-140985589
Length
89 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTGGGACCACTCCCTTTCAGCTG
3' ss Score
5.46
Exon sequences
Seq C1 exon
ATCATTCTTGCATTGGGGAACTACATGAACAGCAGCAAGCGAGGTGCTGTATATGGCTTCAAGCTCCAGAGCCTGGACCTG
Seq A exon
GTAAGATGGTGGGGCAGCATGTGCAGGAAGCCTGGGACACCACTGTCAGAGCCAGAGTGCCTAGCTCTGTTGGGACCACTCCCTTTCAG
Seq C2 exon
CTGTTAGACACCAAGTCCACTGACCGGAAAATGACACTGCTGCACTTCATCGCCTTGACGGTGAAGGAGAAATACCCAGAGTTGGCTAACTTCTGGCAGGAGCTGCACTTTGTGGAGAAGGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGTGCTGTATATGGCTT
R:
CAGCCTTCTCCACAAAGTGCA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]