GgaINT0047761 @ galGal4
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr7:35037340-35037911:+
Coord C1 exon
chr7:35037340-35037420
Coord A exon
chr7:35037421-35037781
Coord C2 exon
chr7:35037782-35037911
Length
361 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATTGCTTTTTTCTCCCCAGCTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
ATAATCTTGGCTCTTGGTAACTACATGAACAGCAGTAAGCGAGGAGCAGTGTATGGATTTAAGCTACAGAGTCTAGACCTG
Seq A exon
GTGAGTAAACCACAGGCAATGAGGGGACACGAGCTGAAATGCATTTCTTGTAAATGCAGGGTGGCTGCTGGCTGCTTGGGGCTCATCAGTGCTTCCCAGCCAGTAAAGGCAGAGGCAGAAGAGTGTGCAGGTCAGGAAAGGCGCTTCCCTGCGCTCTGTATGAAATTACCCTTACCAGCATTTTGGTGGCCCCTCAGGAGAAGGCCACAAATGCTCAGACCACTGTGAACACTTATGTGGGCCTTCACAGTTGTCTCTGTCAGATGAAGAAACATTCTGGAAAAACAAACACCCCTTCAATCAGTTTGTTTGGCGTCCGCTGCACCTTAACCCAGCAATCTCATTGCTTTTTTCTCCCCAG
Seq C2 exon
CTCTTAGAAACAAAGTCAACAGACCGAAAACAAACTCTGCTGCACTATATTTCTAATGTTGTCAAGGAGAAGTACCAGCACGTATCCCTCTTTTACAATGAACTTCATTACGTGGAGAAGGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000037752:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTGGCTCTTGGTAACTACA
R:
CAGCAGCCTTCTCCACGTAAT
Band lengths:
206-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]