BtaINT0063174 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43663719-43665901:-
Coord C1 exon
chr2:43665821-43665901
Coord A exon
chr2:43663849-43665820
Coord C2 exon
chr2:43663719-43663848
Length
1972 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTGTCCCTTCTGGTTTTCAGCTC
3' ss Score
8.55
Exon sequences
Seq C1 exon
ATCATCTTGGCCCTTGGAAACTATATGAATAGCAGTAAACGAGGAGCAGTTTATGGATTTAAACTTCAGAGTTTAGATCTG
Seq A exon
GTGAGTGGGATAAAAGAAATACAAGAGTTATATGAGAGATGAAACAGCTGGCAAAGATTAAACCCTGGAGCAGAGAGGTTCTGCTCCGGGAAGTGGGGTGGGATATTTTGATGAAGATTCTCTGCTAGTGGGAGGATCAGTTGGTACAAATTTTCTGAAACACCATTTGGCAGCAGGCACTTCAAACGAATAATACCTTGTGACTCAGTATTTCCATTTTTAGGACTCCTTCCTCAGGAGTCAGAAGTATGGATTCTGTTATTTTATTTATAATTGCAAACAATTAGCAACAATGTAATGGAGAAGGCAATGGCACCCCACTCCAGTACTCGTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGCTACAGTCCACGGAGTCACTAAGAGTCGGACATGACTGAGCGACTTCACTTCACTTTTTGCTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGACCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTGGGACACGACTGAAGCAATTTAGCAGCAGCAGCAGCAACAATGTAAAGATTGGAAATGATTAAATATGCTGTAATAATAGTTGATCCAATGAGCTCTCCTTCAAGTGTAAGAATATTTGTGAAGAGTTTTCAAAGGAATAGATAATTTGGTGTTTGGGAAAGAAAGAGTATAAGTTGTCTATACAGTTTGATTTTTAACTAAGTAAAATACGGAAGGAAAAACCGAATGGAAGTAGGTCAGGTATTAACAGAGAGGTTGAATGGAATTAGGAAATTCTTTAGAGCTTCTTATTTTTATTTTTCTATGTTGTCTAAAAAAAAAAAAAATTTTTTTTTCCCTTCTTGGATGGAGAAGGGTGCTCTGCTTTTCAGTCACCTGACTTGTGTGAATAGCACTAGAGAAAATGCTCTGTGGAGCCCTGTCGCCCAGGCTGTATCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCGACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAGCTCCTGGAGTTCACTCAGACTCGCGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTTGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGAATCTCCTTGTAGTCCAAGGGACTCGCAAGAGTCTTTTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCAGGCTGTATGGGGTACTGTGATTTCACAGGAGCCTACGGGGCAGCGGGTGGAGTCCCTGACCCGGGGCTATGCGGTTATTTGATAGGGAGTGTGTATTAAATCTCAGTTCTGGCCCCTAGGAGGCCATGGTCCAGTAAGCACGTCTGCTTTGGGTTGGTAAATAAAAGCGGCCAAGTGGGATGTGAGGACTGTGGGGAAAGGGCCTCTGCCTGCCAGGGCGCACCTGTACTCACCTGCCAGTTCCAGCCTGAATCCCACTCTGGCCTTCACTTGGGGAGCAGAGCCTGGAGTCTTGCTGCTTAAGCGGCGGGGAGGCGGTGGGGTGGATGGGGACGAGGAGTTCCGGTGAGGAGAGAAACGTGAACGGCTCTCATGCTTAGAGTCGTCTCTGAGGTTTGGTGTATCCCCTGGTCAGGAAGTCCTCTTGTCACTTAATAATCCAGGGCTGGTTCACGTGAGAACCAAGCTGACTCTCCTGTGGGGGTGTTTTCCATCTCCTCTGGGGCTCTTGTGCTCACGTGTTTATTCTGAGGGGGAGAACGTCATCTTTACTCTAACCCGTGTCCCTTCTGGTTTTCAG
Seq C2 exon
CTCTTAGATACAAAGTCAACGGACCGAAAGCAAACGCTTCTGCACTATATATCCAATGTCGTAAAAGAAAAATATCAACAAGTGTCCCTCTTTTATAATGAGCTTCATTATGTGGAGAAAGCTGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTGGCCCTTGGAAACT
R:
GCGGCAGCTTTCTCCACATAA
Band lengths:
208-2180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]