RnoINT0061643 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38661882-38663539:+
Coord C1 exon
chr3:38661882-38661962
Coord A exon
chr3:38661963-38663409
Coord C2 exon
chr3:38663410-38663539
Length
1447 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
3' ss Seq
CTGTCCCCTTTCGTTTTCAGCTC
3' ss Score
12.4
Exon sequences
Seq C1 exon
ATCATCTTGGCCCTTGGAAACTATATGAATAGCAGCAAACGAGGAGCAGTCTATGGATTCAAACTTCAGAGTTTAGATCTG
Seq A exon
GTGTGTGAACTAAAAGGGAGACAGGGCCCTTGAAGGCCTTACAGCTGCAGAGATTAATTGTGAATCGAGGGCTTCCATTCTGGGAGGGCTGGGGGAGGGTCCTCTTATTGCAGGAGGGTGAGTTGGTCTAAATTTTCTGGAATTACCTTTTGACAGGATGGGTCATTTCACCCGGCATTCCATTTCTAGGAGTTCTGACTCAAGAAGCTTAATTGTAAACACTATATTTTGTAACAATAATCTCAAGTTCCAGTGTGATGGGAAGTGACTAGGAGACAGCTAATAGAGTGAGCCATTTAAATCAAGTTTTTAAAATTGGGTGTGCTTTTCAGACACATAGATAATTTTGTTTAGAACAAAGTAGAATATAGTTACACATAGATAATGTAATTTCTACTTTCCTGCGTGGACAGAATACTGTGCTTTGCAAAGTTATCCTTTGCGCATCCCTGTCCAGGCTGTGCAGGCCTAGTGTGGCTTCTAGGATGGGGAAGGCATAGTTAATTGACAGTGTCAAAATACACACACCACACACACCACACACACACACACACACACACACACACACACACCACACCACACTACAACCTTCCTGTCTTAACAAACAACACAGATATAGACACACACATACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGATCGATTATAATCTGATCATTTGTATCCACATAGGAATTGTTCCAGGATCTTCAAGGATACTAAACATCTTAGGTGCTCAAGTCCTTTTTATAAAGTAGTGTAATGTGTGGGTTTAACCTAAACATGACCCCTAACTTTTAGATCATGACAGGCTCACATATGATACCTAGCACAGTTATGTTGTGCTTTGCAAGTAGTCGTTTCATAGTATTACGTAATCAAATTCACTAGAAAAAGTCGGTACCGAGACCAGCTTATTTCTTGATATTTTCTGTCTCGGATTTGTAAAGCTCACAGATGCAGGATACCTAGACACAGAGAGGGAGGCAGCTCTCAGAACCATCAGAGCTAGGGAGTAAGGGAGCCCGCGCTGCCTCTGGAGGCGCAGAGCTCACCTGTGGGCTCCACCTTCATCTCAGCTCCTCGTGCTGATGAGAACTAACACTGGGAGTCTTTCCACTTTGAGCTAGGGAGGTAGGTGGGAGCAGATGCAGGGATAGGGAGAGTTCTTATAAGAAAGATGAAGATCTGAAGCCTTCCTAGCTCAGAATGTACCCAGGCATTTAGCGGGCACTGTCAGGACGCCCTCGGGCTGCTTAGGCACCGTGGGCTGGTTCTCTCCAGAGCCCCTTGAATCTTGAGTCTGCTCTGGGGATCTTTTTTCCAGCCCTTAGTTATTTACTCTGGATACTCAGTCCTTGCTCTTGCACCTAACCCCTGTCCCCTTTCGTTTTCAG
Seq C2 exon
CTCTTAGATACGAAGTCGACAGACCGAAAGCAAACGCTGCTGCACTATATATCAAATGTGGTGAAGGAGAAATATCAACAAGTTACCCTGTTTTACAACGAGCTTCATTATGTGGAAAAAGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTGGCCCTTGGAAACT
R:
CTGCTGCAGCTTTTTCCACAT
Band lengths:
210-1657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]