DreINT0069076 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4783750-4784128:-
Coord C1 exon
chr9:4784048-4784128
Coord A exon
chr9:4783880-4784047
Coord C2 exon
chr9:4783750-4783879
Length
168 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTA
5' ss Score
2.14
3' ss Seq
TTGTGTGTGTTTTCTTCCAGTTA
3' ss Score
10.45
Exon sequences
Seq C1 exon
ATCATCTTAGCTCTGGGGAACTACATGAACAGCAGTAAAAGAGGAGCAGTGTATGGTTTCAAGCTGCAGAGCTTAGATCTG
Seq A exon
GTATTATTTCCACACCCATTTTTCTTTTAATCCAATCACACATTAGCTATTTTAAATTAAATGACTGGTTTGGCTACTTTAATAAGTAAAAATGTATTTAATTTGATTAATTTTATATTTAGGTTCAGTATCAAAAGGTTCTGATGGTTTGTGTGTGTTTTCTTCCAG
Seq C2 exon
TTATTAGACACTAAATCAACAGACCGCAAGATCACTCTTCTGCACTACATAGCAAATGTAGTGAAGGACAAATACCAGCAGGTGTCGCTCTTCTATAACGAGCTTAACTATGTGGAAAAAGCGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCTTAGCTCTGGGGAACT
R:
AGCTGCCGCTTTTTCCACATA
Band lengths:
210-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]