BtaINT0063158 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45517622-45517920:+
Coord C1 exon
chr19:45517622-45517702
Coord A exon
chr19:45517703-45517790
Coord C2 exon
chr19:45517791-45517920
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
ACAGCAGGTCCTCATTGCAGCTG
3' ss Score
4.68
Exon sequences
Seq C1 exon
ATCGTCCTGGCTTTTGGCAACTACATGAACAGCAGCAAGCGTGGAGCAGCCTATGGCTTCCGGCTTCAGAGTCTGGATGCA
Seq A exon
GTAAGGAAGCGGGGAAGGAGGGGGCCCCCTGACCTGCGGGATGGGGGATGGCTGGGGGTATGTGGCTTACAGCAGGTCCTCATTGCAG
Seq C2 exon
CTGTTGGAGATGAAGTCGACTGACCGCAAGCAGACGCTGCTGCATTACCTGGTGAAGGTCATTGCTGAAAAGTACCCACAGCTCACAGGTTTCCACAGCGACCTGCACTTTCTGGACAAGGCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(7.1=100)
A:
NA
C2:
PF0218118=FH2=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTACATGAACAGCAGC
R:
GTCGCTGTGGAAACCTGTGAG
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development