HsaINT0065338 @ hg19
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:94016504-94020218:+
Coord C1 exon
chr1:94016504-94016662
Coord A exon
chr1:94016663-94017965
Coord C2 exon
chr1:94017966-94020218
Length
1303 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TTTTTCCTCCTGGACTGCAGGTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq A exon
GTGCAGTAACTTATATCTAAACTAACCAGGCACCTTTGTGCCATGTGTGACATAGGAAGAGTAACATAAAATGAAAACACATTCAACAGGTTGAAAAAAATAAGGAAACTTAAAGGGCATCCAAGATTAATTGTTCACTATGTGAGCTGAGTGTAGGCTTGATCTTGTGAATATTACCACAAGAAACATTTTGTGGCACTTTACTGTTTGAGTAACGTTGGTGTGAAGCTTAATTGATGCCTTTTGCTTTATGTCCCGCTTAAGTCTGTGTGAAGGATTTGTGTTTTTCTGCCTTACAAATAGAATTTGATTTATTGGGCAGGAATTCATGGATAGTAATGCTCTCTGCCCCCTTTACTTCAGAAAACACAGTGACTTTAGTGAATTTGAATAGTGAAACTGCTCTGAAATGCTATGGAAAGCCGACTCCCCAAAGAGTGGTTTCTTCTAGAAGTTTGAATTTGTAGCTACAGTTTCCAAGAAGAAAAATAGTAGTTGGATAATTTAGTAAAATAATAACATCATTTTCATTTTCTTACCTATTCTTAACTTTGGTTTCCTAAAGGAAGAAAATGAGCAGGTAGCACATAATCTATTTAAGTAGATTTAAAGAGAGTTTCAAAATAAATCTCCTGGTCTAGCTCTTAGGTGAATAAAATAGATTTTGTTTGAGACCTCAAAATATTTTGAGGTTAGCTGGTAATTTTCAATAATTTACAAGCTTCCTTCCAAACTAATCTCATACTTTTGTATGTTTCATCTTGAAAATATCTTTTGGGAAATACCACTTTAGTGATTATTTAGCATTTAGCAGTTACACATAGGAAAATACACAGTTACATAGAAAAATACACATTTGAAGATAGAGGAAACCTTGAATGGAGGGGAAGTGTTGACAAATTTTAATTTTTAAAGGAGAAACTTTTTGACTATCTGGGTTAGAGGAAGATATGTGTACCGCCTTTAGGGCATTTTGTTATTTCCGCTGAATCATTAGTTATTAGGATAGATAAATTTTTCCAATTAGTTTCAGCAAGCGTTGTTGGAAACACTGTGCAGTCAAGGATTGTGCAGTGCTGGTTGTGTGACCACACCCTGAGTCAGTGGTGTGGGGAAGTAAAGTGTGAAGAAGCAGTAAGATTGGTTTTTAATTTTGCCCATGTTTTAAATTTTCCTGGTGTTTTCGGTAGCTGACTATAAAATGATAGAGACATTTGGGACAGGCACTTTAAACTGAACACCCCTTTTGGTTTTACCAAAGGTCTTCAGTAATTGTTCTTTTCTTTTTCCTCCTGGACTGCAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGAGGGTATTAGAGTTGTCAGGCTCAAAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTTTTTTTTTACTAACTTCATTAGCATTTCCATACATTGTTTTTAAAAATCATAATACCAACCCTTAAGTTCCTAGTTCACAGTTATTCCCACAAAAGAAAAAGCCAACAATAGTGTACCATTTTTCTATTTATTTTATTGCTGTCTAATCAATAAAGAATGCAGAGCTGTCAAAAAATGTGTCTTACATTAGCTGTCCCAACAGGATTGTCTTCCCTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCACTATCTGTCAGATCCTTGCCATCTGTCAGTGTCTGCCTGCGCCACCTCCGTGCTTGCTTAACATCCTGTTGCATGTCTAGCGTGATTGAGCTAGATTTTTCAGGCATGTCTTTAGATTCCCTTGTTCTTGTCAAAGCCTTGTTTTGTTTTACATTTGTAGTGCAAATCACTTTGTCAAACATCTCCAGCACTAATGTTTCCATCTTAGTATTTGTGCACACTGCTATAACTTCCCCACTGCAAACATTCCAGTTTTGGCATTACGAAGAAGTAGCTGTGAACCTGAAGTATTTATGATAAGAAAAAGAAAACATCTCTGCTGTAGCCTACAGCCCAGTTGAAAGAACTCTTTGAAACGTGATACATCTTCAGCACCTCAGTCTGGGAAGAATCTAGTCAGCACTGAAATCCTGGCATAATAAACACAGAAGATATTCACCACCTCAAGACAAAGGACTATTGTCAAAAGTCAGCTGCTTCCATTCAAATGCTGCCTTAAACTTGAGTGCCTAAATCTGTTGATTGCCAACACTACCACTACAGTATCCCACAAAGGGCTTTATGTGTCAGCTCAGTGCGACCTGCTTTAACTCTGCAGCACCGCTGCAGCTGCCGATGTAGCCTCGGTAGGTGGCTATTAGAGCTCTACCATATACAGTGGTGCATCTTCAAATTTATGCATCAAACTAAAGACATGTCCAAGTCCATTTTAATTTCCTCAGTGGTTTTATGAGAAGTTTTATGGGCCTCCCCCAATTGTCTTTTTATTTTGGGTTATGACGATCATGTTTGATAATTACAATGATAGTCTCTTTCCACGTGATGCTTTTGTTTGAACCTGATAAAATTTAGTGAAACTTTGTAATGATCTATGTGCACTTTTACTTGTAAAATGGAATTTCTGTATGTTTATACTTGTAAATATGATTGTTGTTAGTGCTCCTGTTGCTCATGGTGTCCTGCCTCGCATTTGTGATTCTGTTAATGACATGTATCTTAACTAATTTCTTAGTGGTGTTGTAATAGGGAGATGGGGCAGGTGGGGGGTTATTTGTACCACTGAATCTTCATTAATTTGGTTCTTTACTGTTTTGAGGGGAGAAAGAACGTGAAATGGTTTGTGTATTATTGAATTTTAAGCAATATTTTAGAAGCTGTGTGACTGCTTTAATAACTTTTTCCCAGTGTTATTTGAATCATACTACCCGTTATACTAAAGCTGAATGACAATTGTGTGAAAGTTACTGCCTTCATAAGATCAAGTCACCACTGTTACACAGCTGACATATAGTGTATTACCTTTGCAGCTAGTAAACTATAAAGTTTAGATATTGAATCTCGTTACAGGGTTATTTATATAATGTGACATTATTCAGTACTGACAGACTACATGAAGTAGTTTTAAAATCTAGTGCTATTTTTATTTTAAAGGTTAGCAATGAGGAGGAAATGTGATCTGGCTGTGTTTGTCTTCTGTACAAAGCCTGAAGTGCTTATGGTTTTTTGGCTAACAGCCACAGAGGGCAAAGTTTAAGACTTTCTTGTAAGGACTAACTGTTCTTTTCAAGCTACTGTTTGTTTTTCTAAAAGCAGGATTTGCTTCCGTAGGAGGCAAGTTCCTTGATGTGGAATAGTGCAACCTGTATATGGGTTATTATAATAGGAAAGACATTTGTACTTGCACAGTTTAAATCATTCTTAAATTTTGAACATGTGAATTGTCCCAAAAAATCTTTAATTTTTTGGTAATTTTTACTCTTTTTGTGCACATGTTGATTTCTTAATGGTAAATCCTTCATTTAAAGATAGTGTTCTCTGTTGAGAATATTTACATGGAATAAAACAATCTTTTCATGGCCTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-FNBP1L:NM_001164473:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.630
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=66.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAAGGTGACGGATGGAC
R:
TGTTGGCTTTTTCTTTTGTGGGA
Band lengths:
349-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)