GgaINT0035276 @ galGal3
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14564698-14566187:-
Coord C1 exon
chr8:14566029-14566187
Coord A exon
chr8:14564961-14566028
Coord C2 exon
chr8:14564698-14564960
Length
1068 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TTTTTCCTCTTGGACTGCAGGTT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCATAATGAAGGCACTCTAGCAATGAAAGAAGGGGAAATTTTGTACATTATTGAGGAGGACAAAGGAGATGGGTGGACAAGAGCTCGAAGACAAAATGGAGAGGAAGGCTATGTACCAACATCTTATATAGATGTAACACTAGAGAAAAACAGCAAAG
Seq A exon
GTGCAGTAACCTATATCTAACAGTACATTGGTAACTTTCAAGTGTACGTTTTTCAAATGAAAATAGGGGAAAATAGTAAGTCAGGCAGGTTCATGGAAAGCAATAGAGTAACAGAAGTCAGGAATGGTCTATTGTTTGCAATGTGAATTTGCTGTAGCTTTTCTAGAGATAACAGCATTAAATTGGTCTATAATTCTGGTTCATGCTTTCTGCTTTGTTTCACTGATTACTATGTTCCTCCTCTACAAAGCACTAAATCCAATTCAGCTATAAAATGGAGAAAGACCAGGATTCCTGCTTGTTCTGTAGGATACTTAGTCTTTATAGAGAACTGAAAAATTACTTAAGTTTTGAAGACCTCTAAGATATACTGTTCACTTCCCTGACTTAAAACTATGTGCTTAAACGAGTGTTTTATCCTCTACTAATGGAATTCAGTTACTGAAAATTAATTTCCTTCCTTAGCAAATACTTGGCATCTTTCACTTCTTAAACAGGAAGTTCTTTTCTGAATCAAAAAGCTCAACAAAATTACTCAGGAAGAAACAGTATGATTAAAAAGGACAGAAGGTCCACTGACCTGCCTCTCCTTCCCTTTCTGTAGTTCTCGTGTAGAATATTGTGTATTGGACACAAGTGCATTGTTTTAACTATAGACACCTTGAACAAAAAGAAACCCAATAACAACAAAAGCCACATTTAATTAATTCTTGGTGTTTTACTCAATTTTTACCTCCATTTGCTCCTGAAAAGGGAATGATTTTAGTTTCTTAATCTGTGCCTGTAAGCTGTCTTTGAATTGTATCATGTTTAGTTTGAAATCAAGGTTTTTTTTTTTTTTAAATTAATTCTGTTCCCCTCACTGTTACATCACTGAGGCTTGGAAACTGCATTGCACTACTTGATTTCATGTAGAAACTATTGCTTGTATTTCTAATGTGAATTTATGAGAGTAATACAAGGCTAGTGTATAGCCACTGAGAATGGCCTTTTAGAACTGAGCACGCTTCCCTGTCTTCTAAAGGCCTTCAGTAACTTTGTTCTTTTCTTTTTCCTCTTGGACTGCAG
Seq C2 exon
GTTCCTGAAGCGGGTTTCTGAGAAAATGGGCGAGATCTTGAAGGAGGTTACATGCAGCTGCTTGGGGCGGGGGGTGGGAGGGAGGTGTTAGACTGGGATGCCCATTGAACAGGGGGAAAAGCTAGTTGCATGAATGCATGCAGACATACATTTAGTCACTAACATTCTTAGCATTTCCATACGTAATTAAGGATGTATTACAAATTCTTGAATTTGTGCAGGAAAATAGCATTCCATTACCAGAGTGAAAAGGCAGCTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=74.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACAAGAGCTCGAAGAC
R:
GAGCTGCCTTTTCACTCTGGT
Band lengths:
346-1414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]