BtaINT0063358 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50082610-50086290:-
Coord C1 exon
chr3:50086132-50086290
Coord A exon
chr3:50084865-50086131
Coord C2 exon
chr3:50082610-50084864
Length
1267 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TTTTTCCTCCTGGACTGCAGGTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GACATAATGAAGGCACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAGGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACATCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq A exon
GTGCAGTAACTTACATCTAAACTAATTGGCAACTTTGTAACACATATGACATAGGAATGATAACAAAATGAAAACACAGTCAGTGGGTGGGAAAACATAGGAAAGCTTAAACGGCATCCAAGATTTATTGTTCACTGTGAGCTGAGCGTAGGCTCGATCTTAGGGATGTGAACATTACCACAAGAAGCTATTCTTGTGACGCTTTACCATTTGAGTGATGTTGGTGTGAAGCTTAACTGATGCCTTTTGCTCTGTGTTCTGCTTAAGTCTGTGTGAAGGATTTATGTTTTTCTGCCGTATAAATCATAGAATTTGATCTACTGGGCAGGAATCCATAGATAGAAAGCTCCCTACCCCGTTACACTTTGCTTCAGGAAACAGTGATGGTAGTGAACTCAAGTAAAACTGCACTGAAATGCTTGCTGATGCCCAAAAGAGTGGTTTGGTATAGGAGTTTCAAATTGTAGCTACAGTTTCTAGGAAAAAGTAATAATAATTAGCTAATGGATAAAATACGGATGTAATCATTTTCGTTTTTGTCCCTGTTCTTAATTTTGGTTTCCTAAAGGAAGAAAACAGGCATGTAGCACATAATCTATTTTGTAGTAGGCTAATCAAGAGATGCAAAATAAATGGGCCTGGTCTTGCTCTTAAGTGAATAAAATGGCTTTCTTTTGAGACCCAAGGATATTTTCAGGTTTTCTAGTAATTTTCAGTAATGTACAAGCTTTCTTCTGAATTAATGCTTGTATTTTTCATCTTGAAATGTCTTTTGAGAAATGTCACTTTAGTGATACTAGCATTTAGCAATTATACATAGGAAAGTGGATTCTAAATAAACTAAGATAGAGGACATCTTGCATAGTGGGGAAGTACTGGCAAATTTTGCCTGAAAGAAAAAATGACTTTTTTTCACTAAATGGGTTGGAGGAATATATCTGTACTATCATGAAGGGCATTTCCTCATTTTAACTGAATTGTCAGTTATTAGGATAGTTTTTTTCCCAACTAATTTTAGTAAGCATTTGTGGGAAACACTGTACAGTCAAGATAGGCAGTGCTAGTTGTCTAGGGAAGTAAAGTGAAGAAGCAGTTAAGAGACTGGTCCTTAATTTTGCTCATGTTCCAGCATTTTTTGGTGTTTTTAATAGCTGACTATAAAATGATTTTAGAGGCATTTGGGATGGATGCTTTAAACTGGACATCCCTTTTGGTCTTACCAAAGGTCTTCAGTAATTGTTCTTTTCTTTTTCCTCCTGGACTGCAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGGGGAGGTGTTAGAGTTGTCAGGCTCAGAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTATTTTTTACTAACTTCATTAGCATTTCCATGTGTTGTTTTAAAAAATCATTGTAATACCAACCCTTAAATTTGTCATTTATAGTTATTCATATAAAGGAAAAAAAGCCAACAATGGCTAACCTTTTTTCCATCTGTTTTACTGATATTCAAATTAGAAAGAATGCAGAGCTCTTATTAAATTTGACTGTCGTAACAGGACTATCCGTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCATTGTCTGTCAGAATCCTTGCCATTTGTCAGTGTCTGCCTGCGCCACCTCTGTGCTTGCTTAACATCCTGTTGCATGTCTAGAGTGATCGGGTTTAGATTTTTAGGCATGTTTTTATAATCCCTTGTTCTTGTCAAAGCCTTTGTTTTGTTTTACATTTGTAGTGCAAATCACTCTGTCAAACATCTCCAGCACTAATGTTTCCATCCTAGCATTTGTGTATGCTGCTATAATGTCCCCACTACAGAACATTCCAGTTTTGGCATTATGAAGAAGTAGTTTGTGAACCTGAAGTATTTATGATCAGAAAAAGAAAACATCTCTGCTCTAGCCTACAGCCCAGTTCAAAGAACTCTTTGAAACATGATCGATCTTCAGCCCCTCAGTCTGGGAAGAATCTATAGTCAGCAGTGAAATCCTGGCATAATAAACACAGAAGATACTCACCGCCTCAAGACAAAGGACTGTTGTCAGAAGTCAACTGCTTCCATTCAAATGCTGCCTTAAACTAGAGTGCCTAAATCTGTTGATTGCCAACTCTACCACTACAGTATCCCACAAAGGGCTTCATGTGTCAGCTCAGTGCGACCTCCTTTAACTTGGCAGTGCTGCTGCAGCTGCCATACAACCTCCATAGGGGGCTTTTAGAGCTCTGCCACGTTTGATGGTGCATCTTCAAATTTACACATCAAACTAGAGACATGTCTGAGTCCATTTTACTTTACTCAGTGTTTTCAATAAGAAGTTTTATGGACCTTTCCCCTCATTGTCTTTTAATTTGGGGTTACCGTGTTCTCATTTAATTATTACAATGATAGTCTGTTTCCGAGTGATGATTTTATTTGAACTGGATAAAATATAGTGAAACTTTGTAATGATCTATGTGCACTTTTACTTGTAAAATGGGAGTTTCTGTATGTTTATACTTGTATATATAATTGTCATCAGTGCCCCTATTGCTCATGTTGTCCTGCCTTGCATTTGTGATTCTGTTAATGACTTGTATCTTAACTGATTTCTTAGTGGCATTTAATAGGGAGGTGGGTGGGGGAGGGGGGAATATTTGTAACATGGAAGATTGATTAATTTGGTTCTTTACTGTTTCGAGGGAGGAAAGAAAACGTGAAATGGTCTATGTATTGTTGGATTTCAAGCAATATTTTAGAAGCTGTGTGACTGCTTTAATAATTTTCCCCAGTGTTATTTGAATTGTACTACCAGTTATATTAATACTAAAGCTGAATGACAGTTGTGTGAAAGTGGATGCCTTCGTAAGATCAAGTACGCTCCTATTACACAGCTGACATATAGTGTATTACCTTTAAGGCTAGTAAACTATGAAGTTTTAGATTTTAAATCTCGTTACAGGGTTATTTATATAATGTGACATTATTCAGTACTGACAGACTACATAAAGTAGCTTTAAAATCCAGTGCTATTTTTATTTTCAAGGTTAGCAATGAAGAGGAAATGTGATCTGGCTGTGTTTGTCTTCTGTACAAAGCCTGAAGTGCTTGTGTTTTTTTGGCTAATAGCCACAGAGGGCAAAGTTTAAGGCTTTCTTGTGAGGACTAACTGTTCTTTACAAGCTACTGTTTGTTTTTCTTGCAGGATTTGCTTCCGTAGGAGGCAGGTTCCTTCATGTGGAATAGTGCAACCTGTATATGGATTATTACAATAAGGAAGACATTTGTACTTGCACAGTTTAAATCATTCTTAAATTTGAACATGTGAATTGTCCAAAAGAAATCTTTAATTTTTCAGTAATTTTTACTCTTTCTGTGCACATGTTGATTTCTTAATGTAAATGCTTTGTTTAAGATAGTGTTCTCTGTTGAGAATATTTTCATGGAATAAAATAATCTTTTCATGGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=74.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAATGAAGGCACTCTGGCA
R:
TTTTAAAACAACACATGGAAATGCT
Band lengths:
344-1611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]