HsaINT1013786 @ hg38
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93550947-93554661:+
Coord C1 exon
chr1:93550947-93551105
Coord A exon
chr1:93551106-93552408
Coord C2 exon
chr1:93552409-93554661
Length
1303 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TTTTTCCTCCTGGACTGCAGGTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq A exon
GTGCAGTAACTTATATCTAAACTAACCAGGCACCTTTGTGCCATGTGTGACATAGGAAGAGTAACATAAAATGAAAACACATTCAACAGGTTGAAAAAAATAAGGAAACTTAAAGGGCATCCAAGATTAATTGTTCACTATGTGAGCTGAGTGTAGGCTTGATCTTGTGAATATTACCACAAGAAACATTTTGTGGCACTTTACTGTTTGAGTAACGTTGGTGTGAAGCTTAATTGATGCCTTTTGCTTTATGTCCCGCTTAAGTCTGTGTGAAGGATTTGTGTTTTTCTGCCTTACAAATAGAATTTGATTTATTGGGCAGGAATTCATGGATAGTAATGCTCTCTGCCCCCTTTACTTCAGAAAACACAGTGACTTTAGTGAATTTGAATAGTGAAACTGCTCTGAAATGCTATGGAAAGCCGACTCCCCAAAGAGTGGTTTCTTCTAGAAGTTTGAATTTGTAGCTACAGTTTCCAAGAAGAAAAATAGTAGTTGGATAATTTAGTAAAATAATAACATCATTTTCATTTTCTTACCTATTCTTAACTTTGGTTTCCTAAAGGAAGAAAATGAGCAGGTAGCACATAATCTATTTAAGTAGATTTAAAGAGAGTTTCAAAATAAATCTCCTGGTCTAGCTCTTAGGTGAATAAAATAGATTTTGTTTGAGACCTCAAAATATTTTGAGGTTAGCTGGTAATTTTCAATAATTTACAAGCTTCCTTCCAAACTAATCTCATACTTTTGTATGTTTCATCTTGAAAATATCTTTTGGGAAATACCACTTTAGTGATTATTTAGCATTTAGCAGTTACACATAGGAAAATACACAGTTACATAGAAAAATACACATTTGAAGATAGAGGAAACCTTGAATGGAGGGGAAGTGTTGACAAATTTTAATTTTTAAAGGAGAAACTTTTTGACTATCTGGGTTAGAGGAAGATATGTGTACCGCCTTTAGGGCATTTTGTTATTTCCGCTGAATCATTAGTTATTAGGATAGATAAATTTTTCCAATTAGTTTCAGCAAGCGTTGTTGGAAACACTGTGCAGTCAAGGATTGTGCAGTGCTGGTTGTGTGACCACACCCTGAGTCAGTGGTGTGGGGAAGTAAAGTGTGAAGAAGCAGTAAGATTGGTTTTTAATTTTGCCCATGTTTTAAATTTTCCTGGTGTTTTCGGTAGCTGACTATAAAATGATAGAGACATTTGGGACAGGCACTTTAAACTGAACACCCCTTTTGGTTTTACCAAAGGTCTTCAGTAATTGTTCTTTTCTTTTTCCTCCTGGACTGCAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGAGGGTATTAGAGTTGTCAGGCTCAAAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTTTTTTTTTACTAACTTCATTAGCATTTCCATACATTGTTTTTAAAAATCATAATACCAACCCTTAAGTTCCTAGTTCACAGTTATTCCCACAAAAGAAAAAGCCAACAATAGTGTACCATTTTTCTATTTATTTTATTGCTGTCTAATCAATAAAGAATGCAGAGCTGTCAAAAAATGTGTCTTACATTAGCTGTCCCAACAGGATTGTCTTCCCTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCACTATCTGTCAGATCCTTGCCATCTGTCAGTGTCTGCCTGCGCCACCTCCGTGCTTGCTTAACATCCTGTTGCATGTCTAGCGTGATTGAGCTAGATTTTTCAGGCATGTCTTTAGATTCCCTTGTTCTTGTCAAAGCCTTGTTTTGTTTTACATTTGTAGTGCAAATCACTTTGTCAAACATCTCCAGCACTAATGTTTCCATCTTAGTATTTGTGCACACTGCTATAACTTCCCCACTGCAAACATTCCAGTTTTGGCATTACGAAGAAGTAGCTGTGAACCTGAAGTATTTATGATAAGAAAAAGAAAACATCTCTGCTGTAGCCTACAGCCCAGTTGAAAGAACTCTTTGAAACGTGATACATCTTCAGCACCTCAGTCTGGGAAGAATCTAGTCAGCACTGAAATCCTGGCATAATAAACACAGAAGATATTCACCACCTCAAGACAAAGGACTATTGTCAAAAGTCAGCTGCTTCCATTCAAATGCTGCCTTAAACTTGAGTGCCTAAATCTGTTGATTGCCAACACTACCACTACAGTATCCCACAAAGGGCTTTATGTGTCAGCTCAGTGCGACCTGCTTTAACTCTGCAGCACCGCTGCAGCTGCCGATGTAGCCTCGGTAGGTGGCTATTAGAGCTCTACCATATACAGTGGTGCATCTTCAAATTTATGCATCAAACTAAAGACATGTCCAAGTCCATTTTAATTTCCTCAGTGGTTTTATGAGAAGTTTTATGGGCCTCCCCCAATTGTCTTTTTATTTTGGGTTATGACGATCATGTTTGATAATTACAATGATAGTCTCTTTCCACGTGATGCTTTTGTTTGAACCTGATAAAATTTAGTGAAACTTTGTAATGATCTATGTGCACTTTTACTTGTAAAATGGAATTTCTGTATGTTTATACTTGTAAATATGATTGTTGTTAGTGCTCCTGTTGCTCATGGTGTCCTGCCTCGCATTTGTGATTCTGTTAATGACATGTATCTTAACTAATTTCTTAGTGGTGTTGTAATAGGGAGATGGGGCAGGTGGGGGGTTATTTGTACCACTGAATCTTCATTAATTTGGTTCTTTACTGTTTTGAGGGGAGAAAGAACGTGAAATGGTTTGTGTATTATTGAATTTTAAGCAATATTTTAGAAGCTGTGTGACTGCTTTAATAACTTTTTCCCAGTGTTATTTGAATCATACTACCCGTTATACTAAAGCTGAATGACAATTGTGTGAAAGTTACTGCCTTCATAAGATCAAGTCACCACTGTTACACAGCTGACATATAGTGTATTACCTTTGCAGCTAGTAAACTATAAAGTTTAGATATTGAATCTCGTTACAGGGTTATTTATATAATGTGACATTATTCAGTACTGACAGACTACATGAAGTAGTTTTAAAATCTAGTGCTATTTTTATTTTAAAGGTTAGCAATGAGGAGGAAATGTGATCTGGCTGTGTTTGTCTTCTGTACAAAGCCTGAAGTGCTTATGGTTTTTTGGCTAACAGCCACAGAGGGCAAAGTTTAAGACTTTCTTGTAAGGACTAACTGTTCTTTTCAAGCTACTGTTTGTTTTTCTAAAAGCAGGATTTGCTTCCGTAGGAGGCAAGTTCCTTGATGTGGAATAGTGCAACCTGTATATGGGTTATTATAATAGGAAAGACATTTGTACTTGCACAGTTTAAATCATTCTTAAATTTTGAACATGTGAATTGTCCCAAAAAATCTTTAATTTTTTGGTAATTTTTACTCTTTTTGTGCACATGTTGATTTCTTAATGGTAAATCCTTCATTTAAAGATAGTGTTCTCTGTTGAGAATATTTACATGGAATAAAACAATCTTTTCATGGCCTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942:ENST00000370253:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=66.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAAGGTGACGGATGGAC
R:
TGTTGGCTTTTTCTTTTGTGGGA
Band lengths:
349-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains