HsaEX0026121 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93549278-93560915:+
Coord C1 exon
chr1:93549278-93549426
Coord A exon
chr1:93550947-93551105
Coord C2 exon
chr1:93560853-93560915
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGTGAAAACTCTCATCTAGGAC
3' ss Score
6.2
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCACAATGAGTTTGATGATGAATTTGAGGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq A exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq C2 exon
GTGCGGCGGGGAGAGAAGTTTGTTCCTTGGGGATTTCTATCAAGGTTGATCATACACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.820 C2=NA
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=66.7)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGGGAAGTTACACTGATGA
R:
TCAACCTTGATAGAAATCCCCAAGG
Band lengths:
198-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development