GgaEX1025319 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12812439-12816395:-
Coord C1 exon
chr8:12816247-12816395
Coord A exon
chr8:12815706-12815864
Coord C2 exon
chr8:12812439-12814637
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTTCTTTTTCCCAGGTC
3' ss Score
11.22
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
CCCTGAAGGGAGTTACACGGATGATGCAAATCAGGAAGTCCGAGGCCCACCACAGCAGCACGCACATCCAAATGAGTTTGACGATGAGTTTGAAGATGATGATCCATTACCAGCTATAGGGCATTGCAAGGCAATATATCCTTTTGATG
Seq A exon
GTCATAATGAAGGCACTCTAGCAATGAAAGAAGGGGAAATTTTGTACATTATTGAGGAGGACAAAGGAGATGGGTGGACAAGAGCTCGAAGACAAAATGGAGAGGAAGGCTATGTACCAACATCTTATATAGATGTAACACTAGAGAAAAACAGCAAAG
Seq C2 exon
GTTCCTGAAGCGGGTTTCTGAGAAAATGGGCGAGATCTTGAAGGAGGTTACATGCAGCTGCTTGGGGCGGGGGGTGGGAGGGAGGTGTTAGACTGGGATGCCCATTGAACAGGGGGAAAAGCTAGTTGCATGAATGCATGCAGACATACATTTAGTCACTAACATTCTTAGCATTTCCATACGTAATTAAGGATGTATTACAAATTCTTGAATTTGTGCAGGAAAATAGCATTCCATTACCAGAGTGAAAAGGCAGCTCTTCCTAAAATTGTGTTATTTTCATTGTCATAGGTGGTCAGAGAGGCCCAAACTATATTTTAGCTTGTGCTACATTCTGGTTGGTTTGGTTATACTCTTTCCTACTCATTTTAAATGGCAGTCATTTAGAACCATGTCAGCTACCAGTCTGCCTGCACCACCTCCATGCTCGCCCTTAACCTCCTCTTGCATGCCTAGGACATTCAGGCATGTCTGCATAACACTTGTTTGACATCATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'33-34,'33-32,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.741 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=74.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATCAGGAAGTCCGAGGCC
R:
TTTTCCCCCTGTTCAATGGGC
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]