MmuEX7002122 @ mm10
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122538719-122544692:-
Coord C1 exon
chr3:122544544-122544692
Coord A exon
chr3:122542125-122542283
Coord C2 exon
chr3:122538719-122540924
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTGAAAACTTTTCACCTAGGGC
3' ss Score
5.2
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
CCCTGAGGGAAGTTACACTGATGATGCAAACCAAGAAGTTCGTGGGCCACCCCAACAACATGGCCACCACAGTGAGTTTGATGATGAGTTCGAAGATGATGATCCCCTGCCTGCTATTGGACACTGCAAAGCAATCTACCCTTTTGATG
Seq A exon
GGCATAATGAAGGTACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACAACATACATAGATGTTACTCTAGAGAAAAGCAGTAAAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTGGGGGAGGGTATTAGAGTTGTCAGGCTGAAAGAGAGAGTGAGAGAAGCAAGTTGCATGAATGCATGCAGATTTTTTTTTACTAACTTCATTAGCATTTCCATACATTAAAAAGTCATTCTAGTACCAGTCCTTAAATTCCTAGTCCACAGTTGTTCACATAGAAGAAGGAAAAGAAAAGCCAGCAATGGCTGACCTCTTTTTTCATTTACTGATACCAAATCAGAAAGAATACAGAGCTGTCTTAAAGTTTGTCTTATTTTGGGCTGTCCGTTAGGACTGTCGTCATCAGCTCTGTTGAATTGGCTTCTAGACTCGTCGTCTGTCACCATTTGTCACTGTCCGCCTGCACCACCCCTGCGCTTGCTTAACACCCTGTTGCATGTCTCGCGTGATCTGGGCTTAGAGTTTTCAGGCATGTCTCTGTAATCCCCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'40-38,'40-35,42-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.675 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=75.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAGTTCGTGGGCCAC
R:
TCATGCAACTTGCTTCTCTCACT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types