GgaEX1025319 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14564698-14566718:-
Coord C1 exon
chr8:14566570-14566718
Coord A exon
chr8:14566029-14566187
Coord C2 exon
chr8:14564698-14564960
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTTCTTTTTCCCAGGTC
3' ss Score
11.22
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
CCCTGAAGGGAGTTACACGGATGATGCAAATCAGGAAGTCCGAGGCCCACCACAGCAGCACGCACATCCAAATGAGTTTGACGATGAGTTTGAAGATGATGATCCATTACCAGCTATAGGGCATTGCAAGGCAATATATCCTTTTGATG
Seq A exon
GTCATAATGAAGGCACTCTAGCAATGAAAGAAGGGGAAATTTTGTACATTATTGAGGAGGACAAAGGAGATGGGTGGACAAGAGCTCGAAGACAAAATGGAGAGGAAGGCTATGTACCAACATCTTATATAGATGTAACACTAGAGAAAAACAGCAAAG
Seq C2 exon
GTTCCTGAAGCGGGTTTCTGAGAAAATGGGCGAGATCTTGAAGGAGGTTACATGCAGCTGCTTGGGGCGGGGGGTGGGAGGGAGGTGTTAGACTGGGATGCCCATTGAACAGGGGGAAAAGCTAGTTGCATGAATGCATGCAGACATACATTTAGTCACTAACATTCTTAGCATTTCCATACGTAATTAAGGATGTATTACAAATTCTTGAATTTGTGCAGGAAAATAGCATTCCATTACCAGAGTGAAAAGGCAGCTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'20-29,'20-28,21-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.741 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=74.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATCAGGAAGTCCGAGGCC
R:
TTTTCCCCCTGTTCAATGGGC
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]