RnoEX6011383 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226688844-226694075:-
Coord C1 exon
chr2:226693927-226694075
Coord A exon
chr2:226691455-226691613
Coord C2 exon
chr2:226688844-226690219
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTGAAAACTTTCCACCTAGGGC
3' ss Score
6.13
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
CCCTGAGGGAAGTTATACTGATGATGCAAACCAAGAAGTTCGTGGGCCACCGCAACAACATGGTCACCACAGTGAGTTTGATGACGAGTTTGAAGATGATGATCCCCTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq A exon
GGCACAATGAAGGTACTCTGGCAATGAAAGAAGGGGAGGTGCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCCCGGAGACAGAACGGCGAAGAAGGCTACGTTCCCACAACATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTGGGGGAGGGTATTAGACTTGTCAGGCTGAGAGAGAGTGAGAAAAGCAAGTCGCATGAATGCATGCAGATTGTTTTACTAACGTCATTAGCATTTCCATACATTAAAAAGTCATTATAGTACCAGTCCTTAAATCCCTAGTTCACAGTTGTTCACGTGGAAGAAGGAAAAGAAAAGCCAGCAATGGCTGATCTCTTTTTTCATTAACTGATACCAAGTCAGAAAAAATGCAGAGCTGTCTTAAAGTTTGTCTTATTTGGGCTGTCCAGTCGGACTGTCTTCATCGAGCTCTGTTTTGATTGGCTTTTAGACTCCTTGTCTGTTAGAACCCTTGCCATTTGTCAGTGTCTGCCTGCACCACCTCTGTGCTTGCTTAACATCCTGTTGCATGTCTAGAGTGCTCTGGGCTTAGAGTTTTCAGGCATGTCTCTGTATTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'24-24,'24-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.796 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=74.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATTGGACACTGCAAAGCT
R:
ACGTGAACAACTGTGAACTAGGG
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]