BtaEX6016556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50082610-50087760:-
Coord C1 exon
chr3:50087612-50087760
Coord A exon
chr3:50086132-50086290
Coord C2 exon
chr3:50082610-50084864
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATGAAAACTCTCATTTAGGAC
3' ss Score
6.48
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAAGAAGTTCGTGGACCACCCCAACAGCATGGCCACCACAGTGAGTTTGATGATGAGTTTGAAGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq A exon
GACATAATGAAGGCACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAGGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACATCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGGGGAGGTGTTAGAGTTGTCAGGCTCAGAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTATTTTTTACTAACTTCATTAGCATTTCCATGTGTTGTTTTAAAAAATCATTGTAATACCAACCCTTAAATTTGTCATTTATAGTTATTCATATAAAGGAAAAAAAGCCAACAATGGCTAACCTTTTTTCCATCTGTTTTACTGATATTCAAATTAGAAAGAATGCAGAGCTCTTATTAAATTTGACTGTCGTAACAGGACTATCCGTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCATTGTCTGTCAGAATCCTTGCCATTTGTCAGTGTCTGCCTGCGCCACCTCTGTGCTTGCTTAACATCCTGTTGCATGTCTAGAGTGATCGGGTTTAGATTTTTAGGCATGTTTTTATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383-'21-29,'21-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=0.889 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=74.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGTTCGTGGACCACCC
R:
TCATGCAACTTGCTTCTCTCACT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]