HsaEX0026121 @ hg19
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:94014835-94020218:+
Coord C1 exon
chr1:94014835-94014983
Coord A exon
chr1:94016504-94016662
Coord C2 exon
chr1:94017966-94020218
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGTGAAAACTCTCATCTAGGAC
3' ss Score
6.2
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
TCCTGAGGGAAGTTACACTGATGATGCAAACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCACAATGAGTTTGATGATGAATTTGAGGATGATGATCCCTTGCCTGCTATTGGACACTGCAAAGCTATCTACCCTTTTGATG
Seq A exon
GACATAATGAAGGTACTCTAGCAATGAAAGAAGGTGAAGTTCTCTACATTATAGAGGAGGACAAAGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACGTCATACATAGATGTAACTCTAGAGAAAAACAGTAAAG
Seq C2 exon
GTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGAGGGTATTAGAGTTGTCAGGCTCAAAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTTTTTTTTTACTAACTTCATTAGCATTTCCATACATTGTTTTTAAAAATCATAATACCAACCCTTAAGTTCCTAGTTCACAGTTATTCCCACAAAAGAAAAAGCCAACAATAGTGTACCATTTTTCTATTTATTTTATTGCTGTCTAATCAATAAAGAATGCAGAGCTGTCAAAAAATGTGTCTTACATTAGCTGTCCCAACAGGATTGTCTTCCCTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCACTATCTGTCAGATCCTTGCCATCTGTCAGTGTCTGCCTGCGCCACCTCCGTGCTTGCTTAACATCCTGTTGCATGTCTAGCGTGATTGAGCTAGATTTTTCAGGCATGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.776 C2=0.630
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(14.6=13.7)
A:
PF0001823=SH3_1=PD(83.3=74.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAAACCAGGAAGTCCGT
R:
TGCAACTTGCTTCTCTCACTCT
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)