HsaINT0066531 @ hg38
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77964254-77964747:-
Coord C1 exon
chr1:77964646-77964747
Coord A exon
chr1:77964357-77964645
Coord C2 exon
chr1:77964254-77964356
Length
289 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTTAGTCTTTTTTACATAAGGTC
3' ss Score
3.35
Exon sequences
Seq C1 exon
CAAGCCAAGGAAATGGTGTTAGAGTTAATTCGTGATCAAGGCGGTTTCAGAGAAGTTCGGAATGAGTATGGGTCAAGAATAGGAGGAAATGAAGGGATAGAT
Seq A exon
GTAAGTAAAAATACCCATTCAGAAATGGTTGTATGCTAATTCATAAATATAATAGTGTTTTCTGTTTTGTGTTAAGTAGCTCTAACATTGTTATCCTTTTATTTCACCTTTATACTTTAGAATACAGAATTCTATATATCTTGTTACCCTATTTACTATAAATATAGAATTATATGTACTTTTATGATTTGAGGCAGATTTTCAGGAAATGGCGCTTTTTTAAAATACTTTTTTTTACTTTAAACCCTGAGAAGCTAGCTTTCTTAATACTTAGTCTTTTTTACATAAG
Seq C2 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATCAAAAAAATACAAAATGATGCTGGTGTTCGCATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613:ENST00000294623:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(7.7=14.7),PF0001324=KH_1=PU(3.2=5.9)
A:
NA
C2:
PF0001324=KH_1=FE(54.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAGGAAATGGTGTTAGAGT
R:
CTGGCTTAAACTGAATGCGAACA
Band lengths:
204-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development