HsaINT0066555 @ hg19
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133507329-133507665:+
Coord C1 exon
chr9:133507329-133507409
Coord A exon
chr9:133507410-133507588
Coord C2 exon
chr9:133507589-133507665
Length
179 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GACCCTCTTGTTATCCACAGTGG
3' ss Score
8.8
Exon sequences
Seq C1 exon
TACCTTTCCTCCAAGGAGCTCCGGGTGCTTCCCAAACATGGCTGCCAAGGTGAATGGGAACCCCCACAGCACCCCTGTGAG
Seq A exon
GTAGGTGACCTGCTGTGACTCAGTTGGGGACAGACGGCACTAAGGTGGTCACTTGGCTATTGCCGACAGGCAAGGGTCCGGTGATGCTTGGCTGGGGTGAGGGAGGTGAGCAGTGAAGAGGGAGACGACAGGGGTGACTTGCCCCCTATAGGAACGAGTGACCCTCTTGTTATCCACAG
Seq C2 exon
TGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-FUBP3:NM_003934:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTCCGGGTGCTTC
R:
TTGGGACCTGCTGTGTGGG
Band lengths:
146-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)