RnoINT0062956 @ rn6
Intron Retention
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10226011-10226286:-
Coord C1 exon
chr3:10226215-10226286
Coord A exon
chr3:10226088-10226214
Coord C2 exon
chr3:10226011-10226087
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GCATTCTCTGTCATCCACAGCGG
3' ss Score
9.71
Exon sequences
Seq C1 exon
CACCTTTCCCCCCAGGGCCTTCCCCAACATCGCTGCTAAAGTTAACGGGAACCCCCACAGCACCCCTGTGAG
Seq A exon
GTAGGTAATTAACTGTCCCTCTGCCAGTAGGAGGGTGAGGGAGTCAACAATAAAGAGGAGGAGGCTTGGAAAGCAGGGGAGGGCTCAATGCCCTGAGCTGTCATAAAGCATTCTCTGTCATCCACAG
Seq C2 exon
CGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAGCAAGTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139:ENSRNOT00000021871:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCAACATCGCTGCTAA
R:
TTGGGACTTGCTGTGTAGGCT
Band lengths:
131-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]