MmuINT0066469 @ mm10
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31612837-31613107:+
Coord C1 exon
chr2:31612837-31612908
Coord A exon
chr2:31612909-31613030
Coord C2 exon
chr2:31613031-31613107
Length
122 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GATTCTTCTGTCACCCACAGTGG
3' ss Score
8.55
Exon sequences
Seq C1 exon
CACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCCCTGTGAG
Seq A exon
GTAGGTGTTAACTGTCCCTCTGCCAGAAGGAGGGCGGGGCTGGGGGGCAGACGGTAAAGAGGCAGGGGGGTGTGGGGCTCTGTGCCTCCTGCTATCACAAAGGATTCTTCTGTCACCCACAG
Seq C2 exon
TGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAACAAGTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843:ENSMUST00000113482:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCTCCCAGGGGCTTC
R:
TGGGACTTGTTGTGTAGGCTG
Band lengths:
146-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types