HsaINT0070377 @ hg19
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127691495-127693685:-
Coord C1 exon
chr9:127693595-127693685
Coord A exon
chr9:127691570-127693594
Coord C2 exon
chr9:127691495-127691569
Length
2025 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CGTCACCCTCCTCACCCAAGACT
3' ss Score
2.89
Exon sequences
Seq C1 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTCTGAGAAGGAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq A exon
GTATGTCTAAGAACTCATAAAAAGCAAACAACAGGAAACTTGCCTTGCTTGACTCTCTTCCTATAAAATAGCCATATAGGATGACTTTATAGTTATTTTCACATATCATTTTGATCTTTTTAGAAAGGAGCAAGTATACCCTCTTCTTTTGTTAGTGTAGTAAATAGTATAAATTCAAAACTGAATTTGAAAGTTTATTAAAAAATTTTTTCTGCTCCTGAGGTTTCTAGCCATGGAAATAAAAGATAATAATAATATATGTACAATAGATTTGACCATCTTCCACCATTAGCATAGCCTGCTTTCAGGTGGAAAGGGATGGCGTTAGTATTTAAAGGGAATGGCCAACAGATATTGGATTCATCAGCACCAGAGATTGGTGCTGTGTTGCCACTTCCTGCAGCTCATACCACCTGTGTAAGTGTTGTTGTAGGTCTTTGGGCCACTTTTCAATGGTATTTCTGACTTCAGCACCTGCATAGAAGGTGTCACTCTCATTATGTCTTTTGTCTGCAGTTTACAATTTACACAGCTCCCATTATATCCTTTGCCTGAGGAGGGCATGGTCATGATAGAATTGTGAGTTATTATTTTGGTTTCTGCCAGTGGATACATTTGGAAAGCTTCATCCTGTAAAGTGGTTCATGGCTTCTGTGTCTCTTTTTGTCCCTTGGCCTTTTAATGCCCATTTTATTGGAGTAAAACAGCAGACCGAAGTTCACCAAGTGGTATGTGAAATATTTATATTTGTGTAGCTATCAGACCCAAATTCACCAAATTGTATGTGAAGTATTTGTATTTATGTAGTTATCAAAGGTTCATAGCATAGCTCACAACTACCAGTTAATTATTTTGTCCTCACTAGAGCCTTATTAGGCTTAGCAAGGTTAAGGCCTCACAAGTAGTAAGTGGTAGAGCTGGGATCCAAACCCAGATTTATTTGATGCTAGAGTCTTAATTCCATCTGCCTTAAACTTAATTGTTGCTATCCTGTTACTCCTACCCATAAATAATATCAGTAACAGAGGTAAAGTAATTTTACATTTGTTTAATGTTGGAGAGAGAGTTATAAAATAATATATATACCTTCCCCATATGGTAGGAAGAATAGTTGAGCTTGACTTACGTTAGAGAAGGGACAGGGAAGAGCACTGACATTTACTGGGCCCACTATGTGGTGAGTATTGTCCTACAGTATTAGTATGAGTAATGATAATAGTCACAGTAACAATAAGAGCTACATTTTATTGAGCACTGTGTGCAAAGCACTTAAGGCACGTAAAATGTTTTATCTAATGCATCTTTTGTGGTAGGTACAATTAATATCATCATTTAATATATGAAGAAACTAATACTACAGGACCAATAATTTGCTTAAGGTCCCCAGCTAAGGACTGACAGAGTTGGGATTTGAGCTACTATGTTTTCACTAAACCATAACTATCTTCTTTGGCCACCTAGATAATTAATTCTGACATTCACATTTAATGTAGCGTAGGTTACCAAGTTCCTGTGTAGAAAGGGAGCTCACTTTTTTAGAGAATTAAGTGCTATCACTATAAAGACAATGCTGCACCTAAGGTGTTTGTTATTGCCCTAACTACTGTTCCTGAGTTGTGTGGACTATAAGCGAGCTGTTTAGTGAGTTCACTTTGATCTATCCTACTGCTAAGACCGGAAAAGGAAGTGGAAACTGAGATTTGAAATTAAGTCATGAGATAAATCTGTGTTTTTCATAGCAGGACATTTCTGATCACCAGGCTAAGCCTAATTCTTGTTTTTCTATCAAGGCTAAACAAACTTGCCTTTTTGTACTCACCATTTATACACCATGGATAGTTTGTACTATACTTGTTTTCCTGTGTTGTTCATTGTTAATGGGAGGCTGTCTGTCTAGCTTTCCTTAACAGGAATGGTTTTCAGGTTAAGAAAATCATCATCATTTCCATTCATTTTTTTGTTTAATTAACTTCCTTTCCTGATGTTTGTCCATTTCTGGTATGTGCGTCACCCTCCTCACCCAAG
Seq C2 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-GOLGA1:NM_002077:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=FE(35.3=100),PF123293=TMF_DNA_bd=PU(45.5=80.6)
A:
NA
C2:
PF068106=Phage_GP20=FE(29.4=100),PF123293=TMF_DNA_bd=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)