GgaINT0126267 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9565166-9565992:+
Coord C1 exon
chr17:9565166-9565256
Coord A exon
chr17:9565257-9565917
Coord C2 exon
chr17:9565918-9565992
Length
661 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
CTTCTCCCACCTAACACAAGATT
3' ss Score
1.9
Exon sequences
Seq C1 exon
GCTTCTGATGGAAGCAGCTCTAGAGAGGATCTTTCATCCCAGTTGTTCAGAAGAAATGAACAAATAAGAAAACTGGAGGTGAAGCTGTCTG
Seq A exon
GTACGTGTCTCGATGCATGTAAAATCTGATTGCTTGGAAGGTAGTTTCCTTTCAACTTCAGTGTTCAGAGTTATGAAAAATGTTTGTTTCATTTCAGAAAGTTAACTTGTAGTAAGCCCCTATCACTCTCATCTAGGTAGCATTTCTGCCCCGTGCTTCAAACAGTCTTTCCCCCCCCTTTTTTTTATATTATTCTATGTGTGTGATGGTTTGTTTCTCTTAGGATCTAAGACTTCTGATATTGACAGTAACGCAGGTGAAATGAAGAAAAAGGAAAAAATTCAGCATCAAACAGTCTCAAGGCTGTTTTGCTTTCTAAGATAATACCTCATTCTGTAGAGCTGTCATTAAGGGTTCTGCTCTGACACTCCTTTCCATTCCTGTTGTATGGAGTGAAACTTCTCGTGTAATTAGCAGCACTAGGACAGACCCTCTTGTTTGTACCACCCATTTACCCTATGGGCAGCAGAGAGCTACTTGCTTGTGTTCATTGTTATGGTCACCCAAGTTTTCCTCAGCAGAAATGATTTTCTAGTTGAGAAAATCATTGCCGTTTTCCACTCATCTTTTTTTTTTTCCCCCTCCTCCCCCTTTTTTTTTCCTGATTTCCTTCCCTAATGTCTGTCCATTCCTGGTCTGTGCTTCTCCCACCTAACACAAG
Seq C2 exon
ATTATGCTGATCAGATCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAAATGCATTAGAAAAGCATCAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]