GgaEX0001075 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9565166-9566579:+
Coord C1 exon
chr17:9565166-9565256
Coord A exon
chr17:9565918-9565992
Coord C2 exon
chr17:9566482-9566579
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCACCTAACACAAGATT
3' ss Score
1.9
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTCTGATGGAAGCAGCTCTAGAGAGGATCTTTCATCCCAGTTGTTCAGAAGAAATGAACAAATAAGAAAACTGGAGGTGAAGCTGTCTG
Seq A exon
ATTATGCTGATCAGATCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAAATGCATTAGAAAAGCATCAAGATT
Seq C2 exon
CTTCCATGAGGAAGTTTCAAGAGCAGAATGAAGCCCACCAGGCCAACCGAGCCAAGATGGCTGAAGGAATGGCTTTGGCCTTAGAAAAAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.516 A=0.538 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGATGGAAGCAGCTCTAGAGA
R:
CCAAAGCCATTCCTTCAGCCA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]