BtaEX0015979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95901441-95904656:-
Coord C1 exon
chr11:95904566-95904656
Coord A exon
chr11:95902478-95902552
Coord C2 exon
chr11:95901441-95901538
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCGTCACACTCCTCACCAAGACT
3' ss Score
-0.09
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTCTGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTTTGAGAAGGAATGAACAGATACGGAAATTAGAGGCCAGACTTTCTG
Seq A exon
ACTATGCTGAACAGGTCCGCACCTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCCTTAGAAAAACACCAGGATT
Seq C2 exon
CTTCCATGAGGAAATTCCAAGAGCAGAATGAGACGTTCCAGGCCAACAGAGCCAGGATGGCAGAAGGACTGGCTTTGGCGTTGGCCAGAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.192 C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGATGGAAGCAGCTCCA
R:
CAAAGCCAGTCCTTCTGCCAT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development