DreEX0035463 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41495047-41501891:-
Coord C1 exon
chr8:41501801-41501891
Coord A exon
chr8:41498073-41498147
Coord C2 exon
chr8:41495047-41495177
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCGGTTTCCCCAACCCTAGACT
3' ss Score
5.37
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCATCTGATGGCAGCAGCTCCAGAGATGACTTTTCTTCTCAGATCCAGCGCAGAAATGACCAGATACGAAAGCTGGAGGCCAAGCTCTCAG
Seq A exon
ACTACGCTGAGCAGCTTCGGCTAATGCAGAAGACCAAGGAGAAGCTTGAGATTGCATTAGAGAAGTATCAGGATT
Seq C2 exon
CATCCATGCGCAAACTTCAAGACCAGAACGAATCTTTCCAGACAAACAGAGCCAAGATGGCAGAAGCCATGTCCTTAGCATTAGAAAAAAAAGACCAGGAGTGGATGGAAAAACTAGCTTCACTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.077 C2=0.591
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGATGGCAGCAGCTCC
R:
TGCTAAGGACATGGCTTCTGC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]