HsaEX0027944 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127690467-127693685:-
Coord C1 exon
chr9:127693595-127693685
Coord A exon
chr9:127691495-127691569
Coord C2 exon
chr9:127690467-127690564
Length
75 bp
Sequences
Splice sites
3' ss Seq
CGTCACCCTCCTCACCCAAGACT
3' ss Score
2.89
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTCTGAGAAGGAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq A exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq C2 exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.279 C2=0.573
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=FE(35.3=100),PF123293=TMF_DNA_bd=PU(45.5=80.6)
A:
PF068106=Phage_GP20=FE(29.4=100),PF123293=TMF_DNA_bd=FE(45.5=100)
C2:
PF123293=TMF_DNA_bd=PD(10.5=18.2),PF0003816=Filament=FE(44.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCAGCTCCAGAGAAGA
R:
GCTAATGCCAAAGCCAGTCCT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)