MmuEX0021412 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39052004-39056150:-
Coord C1 exon
chr2:39056060-39056150
Coord A exon
chr2:39052956-39053030
Coord C2 exon
chr2:39052004-39052101
Length
75 bp
Sequences
Splice sites
3' ss Seq
CACCACCCTCCTCACCCAAGACT
3' ss Score
2.45
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTCCGATGGTAGCAGCTCCAGAGAAGATCTCTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq A exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq C2 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAGCAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCTTTAGCCAGGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.462 A=0.179 C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083176=Spc7=PU(13.7=52.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGTAGCAGCTCCAGAGA
R:
GCTAAAGCCAAAGCCAGTCCT
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types