MmuEX0021413 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39050159-39053030:-
Coord C1 exon
chr2:39052956-39053030
Coord A exon
chr2:39052004-39052101
Coord C2 exon
chr2:39050159-39050191
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAGAGCCTCTTTGTTAACAGCTT
3' ss Score
4.29
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq A exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAGCAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCTTTAGCCAGGAAGGACCAG
Seq C2 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.464 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
PF083176=Spc7=PU(13.7=52.9)
C2:
PF083176=Spc7=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCTGAACAGGTCCGAA
R:
CAAGCTGTTCCATCTTTTCTGACC
Band lengths:
103-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types