GgaEX0001077 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9565918-9567088:+
Coord C1 exon
chr17:9565918-9565992
Coord A exon
chr17:9566482-9566579
Coord C2 exon
chr17:9567056-9567088
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTTCTCTGTTGGTAGCTT
3' ss Score
5.22
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTATGCTGATCAGATCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAAATGCATTAGAAAAGCATCAAGATT
Seq A exon
CTTCCATGAGGAAGTTTCAAGAGCAGAATGAAGCCCACCAGGCCAACCGAGCCAAGATGGCTGAAGGAATGGCTTTGGCCTTAGAAAAAAAGGACCAG
Seq C2 exon
GAGTGGATGGAAAAATTGAGTCACATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.538 A=0.848 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATCAGATCCGAAACTTGC
R:
CTTTTCAATGTGACTCAATTTTTCCA
Band lengths:
103-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]