HsaEX0027942 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124926709-124931406:-
Coord C1 exon
chr9:124931316-124931406
Coord A exon
chr9:124928188-124928285
Coord C2 exon
chr9:124926709-124926741
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAGAGCCTCTTTGTTAACAGCTT
3' ss Score
4.29
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTCTGAGAAGGAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq A exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
Seq C2 exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_MULTIEX2-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.576 C2=0.718
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=FE(35.3=100),PF123293=TMF_DNA_bd=PU(45.5=80.6)
A:
PF123293=TMF_DNA_bd=PD(10.5=18.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGATGGAAGCAGCTCCAG
R:
TTCAAGCTGATCCATCTTTTCTGAC
Band lengths:
119-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development