RnoEX0039168 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23339604-23342248:-
Coord C1 exon
chr3:23342174-23342248
Coord A exon
chr3:23341240-23341337
Coord C2 exon
chr3:23339604-23339636
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATAGAGCCTTTTGTTAACAGCTT
3' ss Score
2.01
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq A exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGGAAGGACCAG
Seq C2 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.515 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCTGAACAGGTCCGAA
R:
CAAGCTGTTCCATCTTTTCTGACC
Band lengths:
103-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]