BtaEX6046121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95899699-95902552:-
Coord C1 exon
chr11:95902478-95902552
Coord A exon
chr11:95901441-95901538
Coord C2 exon
chr11:95899699-95899731
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAGAGCCTCTTTATTAACAGCTT
3' ss Score
4.39
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTATGCTGAACAGGTCCGCACCTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCCTTAGAAAAACACCAGGATT
Seq A exon
CTTCCATGAGGAAATTCCAAGAGCAGAATGAGACGTTCCAGGCCAACAGAGCCAGGATGGCAGAAGGACTGGCTTTGGCGTTGGCCAGAAAGGACCAG
Seq C2 exon
GAATGGTCAGAAAAAGTGGATCAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.515 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCTGAACAGGTCCGC
R:
CAAGCTGATCCACTTTTTCTGACC
Band lengths:
103-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]