DreEX6051153 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41493732-41498147:-
Coord C1 exon
chr8:41498073-41498147
Coord A exon
chr8:41495047-41495177
Coord C2 exon
chr8:41493732-41493860
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTGTTTATTTTTCAGCAT
3' ss Score
9.64
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTACGCTGAGCAGCTTCGGCTAATGCAGAAGACCAAGGAGAAGCTTGAGATTGCATTAGAGAAGTATCAGGATT
Seq A exon
CATCCATGCGCAAACTTCAAGACCAGAACGAATCTTTCCAGACAAACAGAGCCAAGATGGCAGAAGCCATGTCCTTAGCATTAGAAAAAAAAGACCAGGAGTGGATGGAAAAACTAGCTTCACTGGAGCAG
Seq C2 exon
GAGAAGTTGTCTTTGACTTCTCGGCTAGACGAAATGACAGAGCAGAGTTTAAGTCTGTTCCAGAAGAGAGACGACCTGGATGAGCTAGAGGGCTTTCAGCAGCAGGAACTGGCTAAAGTCAAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'4-7,'4-5,5-7=AN
Average complexity
A_C1
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.591 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTAATGCAGAAGACCAA
R:
TGTGTTTGACTTTAGCCAGTTCCT
Band lengths:
186-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]