HsaEX0027942 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127688988-127691569:-
Coord C1 exon
chr9:127691495-127691569
Coord A exon
chr9:127690467-127690564
Coord C2 exon
chr9:127688988-127689020
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAGAGCCTCTTTGTTAACAGCTT
3' ss Score
4.29
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq A exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
Seq C2 exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'6-7,'6-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.573 C2=0.727
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=FE(29.4=100),PF123293=TMF_DNA_bd=FE(45.5=100)
A:
PF123293=TMF_DNA_bd=PD(10.5=18.2),PF0003816=Filament=FE(44.4=100)
C2:
PF120723=DUF3552=FE(10.6=100),PF083176=Spc7=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCTGAACAGGTCCGAA
R:
TCAAGCTGATCCATCTTTTCTGACC
Band lengths:
104-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)