RnoEX0039167 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23341240-23345468:-
Coord C1 exon
chr3:23345378-23345468
Coord A exon
chr3:23342174-23342248
Coord C2 exon
chr3:23341240-23341337
Length
75 bp
Sequences
Splice sites
3' ss Seq
CATCACCCTCCTCACCCAAGACT
3' ss Score
2.96
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTGTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTCTCTG
Seq A exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
Seq C2 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.192 C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCAGCTCCAGAGAAGA
R:
GCTAATGCCAAAGCCAGTCCT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]